Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U9W entry

There are 3 chains in PDB entry 6U9W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 5	TYR 595
B	CYS 5	TYR 595
C	CYS 5	TYR 595

There are 51 helices in PDB entry 6U9W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	10	Right-handed 310
Helix 2	AA2	A	23	49	Right-handed alpha
Helix 3	AA3	A	182	187	Right-handed 310
Helix 4	AA4	A	231	239	Right-handed alpha
Helix 5	AA5	A	241	246	Right-handed alpha
Helix 6	AA6	A	330	344	Right-handed alpha
Helix 7	AA7	A	345	359	Right-handed alpha
Helix 8	AA8	A	366	372	Right-handed alpha
Helix 9	AA9	A	375	377	Right-handed 310
Helix 10	AB1	A	378	386	Right-handed alpha
Helix 11	AB2	A	435	440	Right-handed alpha
Helix 12	AB3	A	492	496	Right-handed 310
Helix 13	AB4	A	511	517	Right-handed alpha
Helix 14	AB5	A	519	531	Right-handed alpha
Helix 15	AB6	A	540	558	Right-handed alpha
Helix 16	AB7	A	560	566	Right-handed alpha
Helix 17	AB8	A	570	581	Right-handed alpha
Helix 18	AB9	B	6	10	Right-handed 310
Helix 19	AC1	B	23	49	Right-handed alpha
Helix 20	AC2	B	182	187	Right-handed 310
Helix 21	AC3	B	231	239	Right-handed alpha
Helix 22	AC4	B	241	248	Right-handed alpha
Helix 23	AC5	B	329	344	Right-handed alpha
Helix 24	AC6	B	345	359	Right-handed alpha
Helix 25	AC7	B	366	372	Right-handed alpha
Helix 26	AC8	B	375	378	Right-handed 310
Helix 27	AC9	B	379	386	Right-handed alpha
Helix 28	AD1	B	435	440	Right-handed alpha
Helix 29	AD2	B	492	496	Right-handed 310
Helix 30	AD3	B	511	517	Right-handed alpha
Helix 31	AD4	B	519	531	Right-handed alpha
Helix 32	AD5	B	540	558	Right-handed alpha
Helix 33	AD6	B	560	566	Right-handed alpha
Helix 34	AD7	B	570	581	Right-handed alpha
Helix 35	AD8	C	6	10	Right-handed 310
Helix 36	AD9	C	23	48	Right-handed alpha
Helix 37	AE1	C	182	187	Right-handed 310
Helix 38	AE2	C	231	239	Right-handed alpha
Helix 39	AE3	C	241	246	Right-handed alpha
Helix 40	AE4	C	329	344	Right-handed alpha
Helix 41	AE5	C	345	359	Right-handed alpha
Helix 42	AE6	C	366	372	Right-handed alpha
Helix 43	AE7	C	375	378	Right-handed 310
Helix 44	AE8	C	379	386	Right-handed alpha
Helix 45	AE9	C	435	440	Right-handed alpha
Helix 46	AF1	C	491	496	Right-handed 310
Helix 47	AF2	C	511	517	Right-handed alpha
Helix 48	AF3	C	519	531	Right-handed alpha
Helix 49	AF4	C	540	558	Right-handed alpha
Helix 50	AF5	C	560	566	Right-handed alpha
Helix 51	AF6	C	570	581	Right-handed alpha

There are 21 sheets in PDB entry 6U9W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	C	388	392	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	392	first strand
Strand 2	A	18	22	parallel
Strand 3	C	12	16	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	305	328	anti-parallel
Strand 3	A	251	261	parallel
Strand 4	A	271	277	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	156	first strand
Strand 2	A	159	168	anti-parallel
Strand 3	A	101	120	anti-parallel
Strand 4	A	305	328	anti-parallel
Strand 5	A	292	300	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	77	first strand
Strand 2	A	80	88	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	392	first strand
Strand 2	C	18	22	parallel
Strand 3	B	12	16	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	402	first strand
Strand 2	A	409	412	anti-parallel
Strand 3	A	428	429	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	305	328	anti-parallel
Strand 3	B	251	261	parallel
Strand 4	B	271	276	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	156	first strand
Strand 2	B	159	168	anti-parallel
Strand 3	B	102	120	anti-parallel
Strand 4	B	305	328	anti-parallel
Strand 5	B	292	300	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	228	230	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	77	first strand
Strand 2	B	80	88	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	409	412	anti-parallel
Strand 3	B	428	429	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	305	328	anti-parallel
Strand 3	C	251	261	parallel
Strand 4	C	271	277	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	156	first strand
Strand 2	C	159	168	anti-parallel
Strand 3	C	102	120	anti-parallel
Strand 4	C	305	328	anti-parallel
Strand 5	C	292	300	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	77	first strand
Strand 2	C	80	88	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	402	first strand
Strand 2	C	409	412	anti-parallel
Strand 3	C	428	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U9W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9W