Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6U9X entry

There are 4 chains in PDB entry 6U9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	VAL 59	GLY 380
A	VAL 59	GLY 380
H	G 30	G 33
K	G 30	G 33

There are 30 helices in PDB entry 6U9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	105	113	Right-handed alpha
Helix 2	AA2	D	116	127	Right-handed alpha
Helix 3	AA3	D	136	142	Right-handed 310
Helix 4	AA4	D	163	166	Right-handed 310
Helix 5	AA5	D	176	191	Right-handed alpha
Helix 6	AA6	D	246	260	Right-handed alpha
Helix 7	AA7	D	264	268	Right-handed 310
Helix 8	AA8	D	278	282	Right-handed 310
Helix 9	AA9	D	306	310	Right-handed 310
Helix 10	AB1	D	315	321	Right-handed alpha
Helix 11	AB2	D	324	334	Right-handed alpha
Helix 12	AB3	D	345	353	Right-handed alpha
Helix 13	AB4	D	359	365	Right-handed alpha
Helix 14	AB5	D	368	372	Right-handed 310
Helix 15	AB6	D	373	378	Right-handed alpha
Helix 16	AB7	A	105	113	Right-handed alpha
Helix 17	AB8	A	116	127	Right-handed alpha
Helix 18	AB9	A	136	142	Right-handed 310
Helix 19	AC1	A	163	166	Right-handed 310
Helix 20	AC2	A	176	191	Right-handed alpha
Helix 21	AC3	A	246	260	Right-handed alpha
Helix 22	AC4	A	264	266	Right-handed 310
Helix 23	AC5	A	278	282	Right-handed 310
Helix 24	AC6	A	306	310	Right-handed 310
Helix 25	AC7	A	315	321	Right-handed alpha
Helix 26	AC8	A	324	333	Right-handed alpha
Helix 27	AC9	A	345	357	Right-handed alpha
Helix 28	AD1	A	359	365	Right-handed alpha
Helix 29	AD2	A	368	372	Right-handed 310
Helix 30	AD3	A	373	378	Right-handed alpha

There are 6 sheets in PDB entry 6U9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	97	104	anti-parallel
Strand 3	D	168	175	anti-parallel
Strand 4	D	129	134	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	235	first strand
Strand 2	D	212	220	anti-parallel
Strand 3	D	197	205	anti-parallel
Strand 4	D	287	293	parallel
Strand 5	D	269	274	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	235	first strand
Strand 2	D	212	220	anti-parallel
Strand 3	D	341	344	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	97	104	anti-parallel
Strand 3	A	168	175	anti-parallel
Strand 4	A	129	134	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	212	220	anti-parallel
Strand 3	A	197	205	anti-parallel
Strand 4	A	287	293	parallel
Strand 5	A	268	274	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	212	220	anti-parallel
Strand 3	A	340	344	anti-parallel
Strand 4	A	334	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6U9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6U9X