Analysis of interatomic Contacts of Structural Units in PDB entry:
6UB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UB1 entry

There are 4 chains in PDB entry 6UB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33ILE 262
B
 GLY 33ILE 262
C
 GLY 33ILE 262
D
 GLY 33ILE 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6UB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 51Right-handed 310
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
83 97Right-handed alpha
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
A
130 133Right-handed 310
Helix 6
AA6
A
150 163Right-handed alpha
Helix 7
AA7
A
181 199Right-handed alpha
Helix 8
AA8
A
214 231Right-handed alpha
Helix 9
AA9
A
242 245Right-handed 310
Helix 10
AB1
A
253 262Right-handed alpha
Helix 11
AB2
B
43 51Right-handed 310
Helix 12
AB3
B
80 82Right-handed 310
Helix 13
AB4
B
83 97Right-handed alpha
Helix 14
AB5
B
117 129Right-handed alpha
Helix 15
AB6
B
130 133Right-handed 310
Helix 16
AB7
B
150 163Right-handed alpha
Helix 17
AB8
B
181 199Right-handed alpha
Helix 18
AB9
B
214 232Right-handed alpha
Helix 19
AC1
B
242 245Right-handed 310
Helix 20
AC2
B
253 262Right-handed alpha
Helix 21
AC3
C
43 51Right-handed 310
Helix 22
AC4
C
80 82Right-handed 310
Helix 23
AC5
C
83 97Right-handed alpha
Helix 24
AC6
C
117 129Right-handed alpha
Helix 25
AC7
C
130 133Right-handed 310
Helix 26
AC8
C
150 163Right-handed alpha
Helix 27
AC9
C
181 199Right-handed alpha
Helix 28
AD1
C
214 232Right-handed alpha
Helix 29
AD2
C
242 245Right-handed 310
Helix 30
AD3
C
253 262Right-handed alpha
Helix 31
AD4
D
43 51Right-handed 310
Helix 32
AD5
D
80 82Right-handed 310
Helix 33
AD6
D
83 97Right-handed alpha
Helix 34
AD7
D
117 129Right-handed alpha
Helix 35
AD8
D
130 133Right-handed 310
Helix 36
AD9
D
150 163Right-handed alpha
Helix 37
AE1
D
181 199Right-handed alpha
Helix 38
AE2
D
214 232Right-handed alpha
Helix 39
AE3
D
242 246Right-handed alpha
Helix 40
AE4
D
253 262Right-handed alpha
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There are 12 sheets in PDB entry 6UB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
55 59parallel
Strand 3
A
73 74parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
137 143parallel
Strand 3
A
170 178parallel
Strand 4
A
203 212parallel
Strand 5
A
235 240parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
251 252anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 40first strand
Strand 2
B
55 59parallel
Strand 3
B
73 74parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
137 143parallel
Strand 3
B
170 178parallel
Strand 4
B
204 212parallel
Strand 5
B
235 240parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 248first strand
Strand 2
B
251 252anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
57 59parallel
Strand 3
C
73 74parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
101 103first strand
Strand 2
C
137 143parallel
Strand 3
C
170 178parallel
Strand 4
C
204 212parallel
Strand 5
C
235 240parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
247 248first strand
Strand 2
C
251 252anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 40first strand
Strand 2
D
57 59parallel
Strand 3
D
73 74parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 103first strand
Strand 2
D
137 143parallel
Strand 3
D
170 178parallel
Strand 4
D
203 212parallel
Strand 5
D
235 240parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 248first strand
Strand 2
D
251 252anti-parallel
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