Analysis of interatomic Contacts of Structural Units in PDB entry:
6UB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UB3 entry

There are 2 chains in PDB entry 6UB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20TYR 267
B
 SER 20TYR 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6UB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 40Right-handed 310
Helix 2
AA2
A
82 84Right-handed 310
Helix 3
AA3
A
85 94Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
110 122Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
171 186Right-handed alpha
Helix 8
AA8
A
203 217Right-handed alpha
Helix 9
AA9
A
231 239Right-handed alpha
Helix 10
AB1
A
239 247Right-handed alpha
Helix 11
AB2
A
260 265Right-handed alpha
Helix 12
AB3
B
35 40Right-handed 310
Helix 13
AB4
B
82 84Right-handed 310
Helix 14
AB5
B
85 94Right-handed alpha
Helix 15
AB6
B
103 107Right-handed 310
Helix 16
AB7
B
110 122Right-handed alpha
Helix 17
AB8
B
142 155Right-handed alpha
Helix 18
AB9
B
171 186Right-handed alpha
Helix 19
AC1
B
203 218Right-handed alpha
Helix 20
AC2
B
231 239Right-handed alpha
Helix 21
AC3
B
239 247Right-handed alpha
Helix 22
AC4
B
260 265Right-handed alpha
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There are 3 sheets in PDB entry 6UB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
46 50parallel
Strand 3
A
68 69parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
97 99parallel
Strand 3
A
128 134parallel
Strand 4
A
162 169parallel
Strand 5
A
190 198parallel
Strand 6
A
221 226parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
46 50parallel
Strand 3
B
68 72parallel
Strand 4
B
97 99parallel
Strand 5
B
128 134parallel
Strand 6
B
162 169parallel
Strand 7
B
190 198parallel
Strand 8
B
221 226parallel
Strand 9
B
23 26parallel
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