Analysis of interatomic Contacts of Structural Units in PDB entry:
6UB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UB8 entry

There are 10 chains in PDB entry 6UB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	ILE 246
B	GLY -2	ILE 246
C	GLY -2	ILE 246
D	GLY -2	ILE 246
E	SER -1	ILE 246
F	SER -1	ILE 246
G	GLY -2	ILE 246
H	SER -1	ILE 246
I	GLY -2	ILE 246
J	GLY -2	ILE 246

There are130 helices in PDB entry 6UB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	17	Right-handed alpha
Helix 2	AA2	A	18	24	Right-handed 310
Helix 3	AA3	A	41	45	Right-handed 310
Helix 4	AA4	A	56	60	Right-handed 310
Helix 5	AA5	A	61	71	Right-handed alpha
Helix 6	AA6	A	81	85	Right-handed 310
Helix 7	AA7	A	88	99	Right-handed alpha
Helix 8	AA8	A	101	106	Right-handed alpha
Helix 9	AA9	A	119	133	Right-handed alpha
Helix 10	AB1	A	149	164	Right-handed alpha
Helix 11	AB2	A	180	197	Right-handed alpha
Helix 12	AB3	A	219	223	Right-handed 310
Helix 13	AB4	A	232	241	Right-handed alpha
Helix 14	AB5	B	10	17	Right-handed alpha
Helix 15	AB6	B	18	24	Right-handed 310
Helix 16	AB7	B	41	45	Right-handed 310
Helix 17	AB8	B	56	60	Right-handed 310
Helix 18	AB9	B	61	70	Right-handed alpha
Helix 19	AC1	B	81	85	Right-handed 310
Helix 20	AC2	B	88	99	Right-handed alpha
Helix 21	AC3	B	101	106	Right-handed alpha
Helix 22	AC4	B	119	133	Right-handed alpha
Helix 23	AC5	B	149	164	Right-handed alpha
Helix 24	AC6	B	180	197	Right-handed alpha
Helix 25	AC7	B	219	223	Right-handed 310
Helix 26	AC8	B	232	241	Right-handed alpha
Helix 27	AC9	C	10	17	Right-handed alpha
Helix 28	AD1	C	18	24	Right-handed 310
Helix 29	AD2	C	41	45	Right-handed 310
Helix 30	AD3	C	56	60	Right-handed 310
Helix 31	AD4	C	61	71	Right-handed alpha
Helix 32	AD5	C	81	85	Right-handed 310
Helix 33	AD6	C	88	100	Right-handed alpha
Helix 34	AD7	C	101	106	Right-handed alpha
Helix 35	AD8	C	119	133	Right-handed alpha
Helix 36	AD9	C	149	164	Right-handed alpha
Helix 37	AE1	C	180	197	Right-handed alpha
Helix 38	AE2	C	219	223	Right-handed 310
Helix 39	AE3	C	232	241	Right-handed alpha
Helix 40	AE4	D	10	17	Right-handed alpha
Helix 41	AE5	D	18	24	Right-handed 310
Helix 42	AE6	D	41	45	Right-handed 310
Helix 43	AE7	D	56	60	Right-handed 310
Helix 44	AE8	D	61	71	Right-handed alpha
Helix 45	AE9	D	81	85	Right-handed 310
Helix 46	AF1	D	88	99	Right-handed alpha
Helix 47	AF2	D	101	106	Right-handed alpha
Helix 48	AF3	D	119	133	Right-handed alpha
Helix 49	AF4	D	149	164	Right-handed alpha
Helix 50	AF5	D	180	197	Right-handed alpha
Helix 51	AF6	D	219	223	Right-handed 310
Helix 52	AF7	D	232	241	Right-handed alpha
Helix 53	AF8	E	10	17	Right-handed alpha
Helix 54	AF9	E	18	24	Right-handed 310
Helix 55	AG1	E	41	45	Right-handed 310
Helix 56	AG2	E	56	60	Right-handed 310
Helix 57	AG3	E	61	71	Right-handed alpha
Helix 58	AG4	E	81	85	Right-handed 310
Helix 59	AG5	E	88	99	Right-handed alpha
Helix 60	AG6	E	101	106	Right-handed alpha
Helix 61	AG7	E	119	133	Right-handed alpha
Helix 62	AG8	E	149	164	Right-handed alpha
Helix 63	AG9	E	180	197	Right-handed alpha
Helix 64	AH1	E	219	223	Right-handed 310
Helix 65	AH2	E	232	241	Right-handed alpha
Helix 66	AH3	F	10	17	Right-handed alpha
Helix 67	AH4	F	18	24	Right-handed 310
Helix 68	AH5	F	41	45	Right-handed 310
Helix 69	AH6	F	56	60	Right-handed 310
Helix 70	AH7	F	61	71	Right-handed alpha
Helix 71	AH8	F	81	85	Right-handed 310
Helix 72	AH9	F	88	99	Right-handed alpha
Helix 73	AI1	F	101	106	Right-handed alpha
Helix 74	AI2	F	119	134	Right-handed alpha
Helix 75	AI3	F	149	164	Right-handed alpha
Helix 76	AI4	F	180	198	Right-handed alpha
Helix 77	AI5	F	219	223	Right-handed 310
Helix 78	AI6	F	232	241	Right-handed alpha
Helix 79	AI7	G	10	17	Right-handed alpha
Helix 80	AI8	G	18	24	Right-handed 310
Helix 81	AI9	G	41	45	Right-handed 310
Helix 82	AJ1	G	56	60	Right-handed 310
Helix 83	AJ2	G	61	71	Right-handed alpha
Helix 84	AJ3	G	81	85	Right-handed 310
Helix 85	AJ4	G	88	99	Right-handed alpha
Helix 86	AJ5	G	101	106	Right-handed alpha
Helix 87	AJ6	G	119	133	Right-handed alpha
Helix 88	AJ7	G	149	164	Right-handed alpha
Helix 89	AJ8	G	180	197	Right-handed alpha
Helix 90	AJ9	G	219	223	Right-handed 310
Helix 91	AK1	G	232	241	Right-handed alpha
Helix 92	AK2	H	10	17	Right-handed alpha
Helix 93	AK3	H	18	24	Right-handed 310
Helix 94	AK4	H	41	45	Right-handed 310
Helix 95	AK5	H	56	60	Right-handed 310
Helix 96	AK6	H	61	70	Right-handed alpha
Helix 97	AK7	H	81	85	Right-handed 310
Helix 98	AK8	H	88	99	Right-handed alpha
Helix 99	AK9	H	101	106	Right-handed alpha
Helix 100	AL1	H	119	133	Right-handed alpha
Helix 101	AL2	H	149	164	Right-handed alpha
Helix 102	AL3	H	180	197	Right-handed alpha
Helix 103	AL4	H	219	223	Right-handed 310
Helix 104	AL5	H	232	241	Right-handed alpha
Helix 105	AL6	I	10	17	Right-handed alpha
Helix 106	AL7	I	18	24	Right-handed 310
Helix 107	AL8	I	41	45	Right-handed 310
Helix 108	AL9	I	56	60	Right-handed 310
Helix 109	AM1	I	61	71	Right-handed alpha
Helix 110	AM2	I	81	85	Right-handed 310
Helix 111	AM3	I	88	99	Right-handed alpha
Helix 112	AM4	I	101	106	Right-handed alpha
Helix 113	AM5	I	119	133	Right-handed alpha
Helix 114	AM6	I	149	164	Right-handed alpha
Helix 115	AM7	I	180	197	Right-handed alpha
Helix 116	AM8	I	219	223	Right-handed 310
Helix 117	AM9	I	232	241	Right-handed alpha
Helix 118	AN1	J	10	17	Right-handed alpha
Helix 119	AN2	J	18	24	Right-handed 310
Helix 120	AN3	J	41	45	Right-handed 310
Helix 121	AN4	J	56	60	Right-handed 310
Helix 122	AN5	J	61	70	Right-handed alpha
Helix 123	AN6	J	81	85	Right-handed 310
Helix 124	AN7	J	88	100	Right-handed alpha
Helix 125	AN8	J	101	106	Right-handed alpha
Helix 126	AN9	J	119	133	Right-handed alpha
Helix 127	AO1	J	149	164	Right-handed alpha
Helix 128	AO2	J	180	197	Right-handed alpha
Helix 129	AO3	J	219	223	Right-handed 310
Helix 130	AO4	J	232	241	Right-handed alpha

There are 18 sheets in PDB entry 6UB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	30	34	parallel
Strand 3	A	5	8	parallel
Strand 4	A	201	206	parallel
Strand 5	A	169	176	parallel
Strand 6	A	141	147	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	110	112	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	30	34	parallel
Strand 3	B	5	8	parallel
Strand 4	B	201	206	parallel
Strand 5	B	169	176	parallel
Strand 6	B	141	147	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	110	112	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	30	34	parallel
Strand 3	C	5	8	parallel
Strand 4	C	201	206	parallel
Strand 5	C	169	176	parallel
Strand 6	C	141	147	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	110	112	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	5	8	parallel
Strand 3	D	201	206	parallel
Strand 4	D	169	176	parallel
Strand 5	D	141	147	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	110	112	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	34	first strand
Strand 2	E	5	8	parallel
Strand 3	E	201	206	parallel
Strand 4	E	169	176	parallel
Strand 5	E	141	147	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	77	first strand
Strand 2	E	110	112	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	34	first strand
Strand 2	F	5	8	parallel
Strand 3	F	201	206	parallel
Strand 4	F	169	176	parallel
Strand 5	F	141	147	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	77	first strand
Strand 2	F	110	112	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	34	first strand
Strand 2	G	5	8	parallel
Strand 3	G	201	206	parallel
Strand 4	G	169	176	parallel
Strand 5	G	141	147	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	77	first strand
Strand 2	G	110	112	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	34	first strand
Strand 2	H	5	8	parallel
Strand 3	H	201	206	parallel
Strand 4	H	169	176	parallel
Strand 5	H	140	147	parallel
Strand 6	H	110	116	parallel
Strand 7	H	75	77	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	50	51	first strand
Strand 2	I	30	34	parallel
Strand 3	I	5	8	parallel
Strand 4	I	201	206	parallel
Strand 5	I	169	176	parallel
Strand 6	I	140	147	parallel
Strand 7	I	110	116	parallel
Strand 8	I	75	77	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	30	34	first strand
Strand 2	J	5	8	parallel
Strand 3	J	201	206	parallel
Strand 4	J	169	176	parallel
Strand 5	J	141	147	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	77	first strand
Strand 2	J	110	112	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UB8