Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UBC entry

There is 1 chain in PDB entry 6UBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 184HIS 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6UBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
197 201Right-handed 310
Helix 2
AA2
A
210 215Right-handed alpha
Helix 3
AA3
A
248 260Right-handed alpha
Helix 4
AA4
A
285 297Right-handed alpha
Helix 5
AA5
A
298 304Right-handed 310
Helix 6
AA6
A
314 316Right-handed 310
Helix 7
AA7
A
317 322Right-handed alpha
Helix 8
AA8
A
322 331Right-handed alpha
Helix 9
AA9
A
346 362Right-handed alpha
Helix 10
AB1
A
384 402Right-handed alpha
Helix 11
AB2
A
417 421Right-handed 310
Helix 12
AB3
A
429 441Right-handed alpha
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There are 4 sheets in PDB entry 6UBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
220 222parallel
Strand 3
A
203 206parallel
Strand 4
A
405 410parallel
Strand 5
A
365 374parallel
Strand 6
A
338 344parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
220 222parallel
Strand 3
A
203 206parallel
Strand 4
A
405 410parallel
Strand 5
A
365 374parallel
Strand 6
A
380 381anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
267 269parallel
Strand 3
A
306 308parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
427 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il