Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UBD entry

There is 1 chain in PDB entry 6UBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 0ARG 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6UBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
20 25Right-handed alpha
Helix 3
AA3
A
26 28Right-handed 310
Helix 4
AA4
A
40 44Right-handed 310
Helix 5
AA5
A
59 71Right-handed alpha
Helix 6
AA6
A
97 109Right-handed alpha
Helix 7
AA7
A
109 115Right-handed alpha
Helix 8
AA8
A
126 130Right-handed 310
Helix 9
AA9
A
131 138Right-handed alpha
Helix 10
AB1
A
156 172Right-handed alpha
Helix 11
AB2
A
194 212Right-handed alpha
Helix 12
AB3
A
240 252Right-handed alpha
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There are 3 sheets in PDB entry 6UBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
30 32parallel
Strand 3
A
13 16parallel
Strand 4
A
215 221parallel
Strand 5
A
175 184parallel
Strand 6
A
148 154parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
30 32parallel
Strand 3
A
13 16parallel
Strand 4
A
215 221parallel
Strand 5
A
175 184parallel
Strand 6
A
190 191anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
78 80parallel
Strand 3
A
118 120parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il