Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UBL entry

There are 2 chains in PDB entry 6UBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0MET 210
B
 SER 0MET 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6UBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 78Right-handed 310
Helix 2
AA2
A
141 144Right-handed 310
Helix 3
AA3
A
206 210Right-handed 310
Helix 4
AA4
B
74 78Right-handed 310
Helix 5
AA5
B
141 144Right-handed 310
Helix 6
AA6
B
206 210Right-handed 310
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There are 6 sheets in PDB entry 6UBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
107 114parallel
Strand 3
A
80 91anti-parallel
Strand 4
A
53 67anti-parallel
Strand 5
A
36 49anti-parallel
Strand 6
A
19 20parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 91first strand
Strand 2
A
99 103anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
145 148anti-parallel
Strand 5
A
178 182anti-parallel
Strand 6
A
192 204anti-parallel
Strand 7
A
169 172anti-parallel
Strand 8
A
153 160anti-parallel
Strand 9
A
128 134anti-parallel
Strand 10
A
107 114anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
107 114parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
153 160anti-parallel
Strand 5
A
169 172anti-parallel
Strand 6
A
192 204anti-parallel
Strand 7
A
36 49anti-parallel
Strand 8
A
19 20parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
107 114parallel
Strand 3
B
80 93anti-parallel
Strand 4
B
53 67anti-parallel
Strand 5
B
36 49anti-parallel
Strand 6
B
19 20parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 93first strand
Strand 2
B
97 103anti-parallel
Strand 3
B
136 140anti-parallel
Strand 4
B
145 148anti-parallel
Strand 5
B
178 182anti-parallel
Strand 6
B
192 204anti-parallel
Strand 7
B
169 172anti-parallel
Strand 8
B
153 160anti-parallel
Strand 9
B
128 134anti-parallel
Strand 10
B
107 114anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
107 114parallel
Strand 3
B
128 134anti-parallel
Strand 4
B
153 160anti-parallel
Strand 5
B
169 172anti-parallel
Strand 6
B
192 204anti-parallel
Strand 7
B
36 49anti-parallel
Strand 8
B
19 20parallel
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