Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UBS entry

There are 5 chains in PDB entry 6UBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 31	GLN 444
B	PRO 31	GLN 444
C	PRO 31	GLN 444
D	PRO 31	GLN 444
E	PRO 31	GLN 444

There are 45 helices in PDB entry 6UBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	42	Right-handed alpha
Helix 2	AA2	A	113	117	Right-handed 310
Helix 3	AA3	A	168	171	Right-handed 310
Helix 4	AA4	A	244	250	Right-handed alpha
Helix 5	AA5	A	252	263	Right-handed alpha
Helix 6	AA6	A	264	267	Right-handed 310
Helix 7	AA7	A	272	293	Right-handed alpha
Helix 8	AA8	A	305	341	Right-handed alpha
Helix 9	AA9	A	395	443	Right-handed alpha
Helix 10	AB1	B	34	42	Right-handed alpha
Helix 11	AB2	B	113	117	Right-handed 310
Helix 12	AB3	B	168	171	Right-handed 310
Helix 13	AB4	B	244	250	Right-handed alpha
Helix 14	AB5	B	252	263	Right-handed alpha
Helix 15	AB6	B	264	267	Right-handed 310
Helix 16	AB7	B	272	293	Right-handed alpha
Helix 17	AB8	B	305	341	Right-handed alpha
Helix 18	AB9	B	395	443	Right-handed alpha
Helix 19	AC1	C	34	42	Right-handed alpha
Helix 20	AC2	C	113	117	Right-handed 310
Helix 21	AC3	C	168	171	Right-handed 310
Helix 22	AC4	C	244	250	Right-handed alpha
Helix 23	AC5	C	252	263	Right-handed alpha
Helix 24	AC6	C	264	267	Right-handed 310
Helix 25	AC7	C	272	293	Right-handed alpha
Helix 26	AC8	C	305	341	Right-handed alpha
Helix 27	AC9	C	395	443	Right-handed alpha
Helix 28	AD1	D	34	42	Right-handed alpha
Helix 29	AD2	D	113	117	Right-handed 310
Helix 30	AD3	D	168	171	Right-handed 310
Helix 31	AD4	D	244	250	Right-handed alpha
Helix 32	AD5	D	252	263	Right-handed alpha
Helix 33	AD6	D	264	267	Right-handed 310
Helix 34	AD7	D	272	293	Right-handed alpha
Helix 35	AD8	D	305	341	Right-handed alpha
Helix 36	AD9	D	395	443	Right-handed alpha
Helix 37	AE1	E	34	42	Right-handed alpha
Helix 38	AE2	E	113	117	Right-handed 310
Helix 39	AE3	E	168	171	Right-handed 310
Helix 40	AE4	E	244	250	Right-handed alpha
Helix 41	AE5	E	252	263	Right-handed alpha
Helix 42	AE6	E	264	267	Right-handed 310
Helix 43	AE7	E	272	293	Right-handed alpha
Helix 44	AE8	E	305	341	Right-handed alpha
Helix 45	AE9	E	395	443	Right-handed alpha

There are 20 sheets in PDB entry 6UBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	142	144	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	61	76	anti-parallel
Strand 6	A	190	194	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	61	76	anti-parallel
Strand 5	A	200	202	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	173	182	anti-parallel
Strand 3	A	230	242	anti-parallel
Strand 4	A	211	213	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	173	182	anti-parallel
Strand 3	A	230	242	anti-parallel
Strand 4	A	220	225	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	142	144	anti-parallel
Strand 3	B	149	153	anti-parallel
Strand 4	B	89	93	anti-parallel
Strand 5	B	61	76	anti-parallel
Strand 6	B	190	194	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	61	76	anti-parallel
Strand 5	B	200	202	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	230	242	anti-parallel
Strand 4	B	211	213	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	173	182	anti-parallel
Strand 3	B	230	242	anti-parallel
Strand 4	B	220	225	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	142	144	anti-parallel
Strand 3	C	149	153	anti-parallel
Strand 4	C	89	93	anti-parallel
Strand 5	C	61	76	anti-parallel
Strand 6	C	190	194	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	61	76	anti-parallel
Strand 5	C	200	202	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	173	182	anti-parallel
Strand 3	C	230	242	anti-parallel
Strand 4	C	211	213	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	173	182	anti-parallel
Strand 3	C	230	242	anti-parallel
Strand 4	C	220	225	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	142	144	anti-parallel
Strand 3	D	149	153	anti-parallel
Strand 4	D	89	93	anti-parallel
Strand 5	D	61	76	anti-parallel
Strand 6	D	190	194	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	61	76	anti-parallel
Strand 5	D	200	202	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	173	182	anti-parallel
Strand 3	D	230	242	anti-parallel
Strand 4	D	211	213	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	173	182	anti-parallel
Strand 3	D	230	242	anti-parallel
Strand 4	D	220	225	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	108	first strand
Strand 2	E	142	144	anti-parallel
Strand 3	E	149	153	anti-parallel
Strand 4	E	89	93	anti-parallel
Strand 5	E	61	76	anti-parallel
Strand 6	E	190	194	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	61	76	anti-parallel
Strand 5	E	200	202	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	173	182	anti-parallel
Strand 3	E	230	242	anti-parallel
Strand 4	E	211	213	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	173	182	anti-parallel
Strand 3	E	230	242	anti-parallel
Strand 4	E	220	225	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBS