Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UBV entry

There are 4 chains in PDB entry 6UBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 452	THR 843
B	GLU 450	THR 843
C	ALA 447	PRO 845
D	GLN 457	ALA 844

There are 50 helices in PDB entry 6UBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	454	492	Right-handed alpha
Helix 2	AA2	A	529	538	Right-handed alpha
Helix 3	AA3	A	539	541	Right-handed 310
Helix 4	AA4	A	542	548	Right-handed alpha
Helix 5	AA5	A	552	556	Right-handed 310
Helix 6	AA6	A	557	562	Right-handed 310
Helix 7	AA7	A	563	565	Right-handed 310
Helix 8	AA8	A	577	581	Right-handed 310
Helix 9	AA9	A	650	653	Right-handed 310
Helix 10	AB1	A	741	745	Right-handed 310
Helix 11	AB2	A	766	771	Right-handed 310
Helix 12	AB3	A	791	793	Right-handed 310
Helix 13	AB4	A	795	799	Right-handed 310
Helix 14	AB5	B	451	492	Right-handed alpha
Helix 15	AB6	B	493	495	Right-handed 310
Helix 16	AB7	B	529	538	Right-handed alpha
Helix 17	AB8	B	539	541	Right-handed 310
Helix 18	AB9	B	542	548	Right-handed alpha
Helix 19	AC1	B	552	556	Right-handed 310
Helix 20	AC2	B	557	562	Right-handed 310
Helix 21	AC3	B	563	565	Right-handed 310
Helix 22	AC4	B	577	581	Right-handed 310
Helix 23	AC5	B	650	653	Right-handed 310
Helix 24	AC6	B	766	771	Right-handed 310
Helix 25	AC7	B	791	793	Right-handed 310
Helix 26	AC8	B	795	799	Right-handed 310
Helix 27	AC9	C	448	492	Right-handed alpha
Helix 28	AD1	C	529	538	Right-handed alpha
Helix 29	AD2	C	539	541	Right-handed 310
Helix 30	AD3	C	542	548	Right-handed alpha
Helix 31	AD4	C	552	556	Right-handed 310
Helix 32	AD5	C	557	562	Right-handed 310
Helix 33	AD6	C	563	565	Right-handed 310
Helix 34	AD7	C	577	581	Right-handed 310
Helix 35	AD8	C	650	653	Right-handed 310
Helix 36	AD9	C	766	771	Right-handed 310
Helix 37	AE1	C	791	793	Right-handed 310
Helix 38	AE2	C	795	799	Right-handed 310
Helix 39	AE3	D	458	492	Right-handed alpha
Helix 40	AE4	D	529	538	Right-handed alpha
Helix 41	AE5	D	539	541	Right-handed 310
Helix 42	AE6	D	542	548	Right-handed alpha
Helix 43	AE7	D	552	556	Right-handed 310
Helix 44	AE8	D	557	562	Right-handed 310
Helix 45	AE9	D	563	565	Right-handed 310
Helix 46	AF1	D	577	581	Right-handed 310
Helix 47	AF2	D	650	653	Right-handed 310
Helix 48	AF3	D	766	771	Right-handed 310
Helix 49	AF4	D	791	793	Right-handed 310
Helix 50	AF5	D	795	799	Right-handed 310

There are 26 sheets in PDB entry 6UBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	617	618	anti-parallel
Strand 3	A	621	632	anti-parallel
Strand 4	A	669	680	anti-parallel
Strand 5	A	780	789	anti-parallel
Strand 6	A	704	709	anti-parallel
Strand 7	A	700	701	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	523	first strand
Strand 2	A	605	611	anti-parallel
Strand 3	A	621	632	anti-parallel
Strand 4	A	669	680	anti-parallel
Strand 5	A	780	789	anti-parallel
Strand 6	A	704	709	anti-parallel
Strand 7	A	729	732	anti-parallel
Strand 8	A	723	726	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	568	first strand
Strand 2	A	526	528	anti-parallel
Strand 3	A	594	600	anti-parallel
Strand 4	A	573	575	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	568	first strand
Strand 2	A	526	528	anti-parallel
Strand 3	A	594	600	anti-parallel
Strand 4	A	643	648	anti-parallel
Strand 5	A	655	658	anti-parallel
Strand 6	A	814	817	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	584	585	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	716	first strand
Strand 2	A	772	778	anti-parallel
Strand 3	A	688	695	anti-parallel
Strand 4	A	819	820	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	509	510	first strand
Strand 2	B	617	618	anti-parallel
Strand 3	B	621	622	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	523	first strand
Strand 2	B	605	611	anti-parallel
Strand 3	B	625	632	anti-parallel
Strand 4	B	669	679	anti-parallel
Strand 5	B	780	789	anti-parallel
Strand 6	B	704	709	anti-parallel
Strand 7	B	700	701	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	685	686	first strand
Strand 2	B	669	679	anti-parallel
Strand 3	B	780	789	anti-parallel
Strand 4	B	704	709	anti-parallel
Strand 5	B	729	732	anti-parallel
Strand 6	B	723	726	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	526	528	anti-parallel
Strand 3	B	594	600	anti-parallel
Strand 4	B	573	575	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	568	first strand
Strand 2	B	526	528	anti-parallel
Strand 3	B	594	600	anti-parallel
Strand 4	B	643	648	anti-parallel
Strand 5	B	655	658	anti-parallel
Strand 6	B	814	817	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	584	585	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	716	first strand
Strand 2	B	772	778	anti-parallel
Strand 3	B	688	695	anti-parallel
Strand 4	B	819	820	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	510	first strand
Strand 2	C	617	618	anti-parallel
Strand 3	C	621	622	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	523	first strand
Strand 2	C	605	611	anti-parallel
Strand 3	C	625	632	anti-parallel
Strand 4	C	669	679	anti-parallel
Strand 5	C	780	789	anti-parallel
Strand 6	C	704	709	anti-parallel
Strand 7	C	729	732	anti-parallel
Strand 8	C	723	726	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	568	first strand
Strand 2	C	526	528	anti-parallel
Strand 3	C	594	600	anti-parallel
Strand 4	C	573	575	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	568	first strand
Strand 2	C	526	528	anti-parallel
Strand 3	C	594	600	anti-parallel
Strand 4	C	643	648	anti-parallel
Strand 5	C	655	658	anti-parallel
Strand 6	C	814	817	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	551	first strand
Strand 2	C	584	585	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	714	716	first strand
Strand 2	C	772	778	anti-parallel
Strand 3	C	688	695	anti-parallel
Strand 4	C	819	820	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	510	first strand
Strand 2	D	617	618	anti-parallel
Strand 3	D	621	622	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	523	first strand
Strand 2	D	605	611	anti-parallel
Strand 3	D	625	632	anti-parallel
Strand 4	D	669	679	anti-parallel
Strand 5	D	780	789	anti-parallel
Strand 6	D	704	709	anti-parallel
Strand 7	D	700	701	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	523	first strand
Strand 2	D	605	611	anti-parallel
Strand 3	D	625	632	anti-parallel
Strand 4	D	669	679	anti-parallel
Strand 5	D	780	789	anti-parallel
Strand 6	D	704	709	anti-parallel
Strand 7	D	729	732	anti-parallel
Strand 8	D	723	726	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	568	first strand
Strand 2	D	526	528	anti-parallel
Strand 3	D	594	600	anti-parallel
Strand 4	D	573	575	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	568	first strand
Strand 2	D	526	528	anti-parallel
Strand 3	D	594	600	anti-parallel
Strand 4	D	643	648	anti-parallel
Strand 5	D	655	658	anti-parallel
Strand 6	D	814	817	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	551	first strand
Strand 2	D	584	585	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	714	716	first strand
Strand 2	D	772	778	anti-parallel
Strand 3	D	688	695	anti-parallel
Strand 4	D	819	820	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBV