Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UBY entry

There are 9 chains in PDB entry 6UBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	CYS 374
B	THR 5	CYS 374
C	THR 5	CYS 374
D	THR 5	CYS 374
E	THR 5	CYS 374
F	THR 5	CYS 374
G	ARG 147	LYS 336
H	THR 5	CYS 374
I	SER 3	LEU 166

There are140 helices in PDB entry 6UBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	79	92	Right-handed alpha
Helix 3	AA3	A	112	126	Right-handed alpha
Helix 4	AA4	A	137	145	Right-handed alpha
Helix 5	AA5	A	171	175	Right-handed 310
Helix 6	AA6	A	181	194	Right-handed alpha
Helix 7	AA7	A	195	197	Right-handed 310
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	232	Right-handed alpha
Helix 10	AB1	A	252	257	Right-handed alpha
Helix 11	AB2	A	258	262	Right-handed 310
Helix 12	AB3	A	273	285	Right-handed alpha
Helix 13	AB4	A	289	295	Right-handed alpha
Helix 14	AB5	A	301	306	Right-handed 310
Helix 15	AB6	A	308	321	Right-handed alpha
Helix 16	AB7	A	337	348	Right-handed alpha
Helix 17	AB8	A	350	355	Right-handed 310
Helix 18	AB9	A	359	366	Right-handed alpha
Helix 19	AC1	A	368	374	Right-handed alpha
Helix 20	AC2	B	55	61	Right-handed alpha
Helix 21	AC3	B	79	92	Right-handed alpha
Helix 22	AC4	B	112	126	Right-handed alpha
Helix 23	AC5	B	137	145	Right-handed alpha
Helix 24	AC6	B	171	175	Right-handed 310
Helix 25	AC7	B	181	194	Right-handed alpha
Helix 26	AC8	B	195	197	Right-handed 310
Helix 27	AC9	B	202	217	Right-handed alpha
Helix 28	AD1	B	222	232	Right-handed alpha
Helix 29	AD2	B	252	257	Right-handed alpha
Helix 30	AD3	B	258	262	Right-handed 310
Helix 31	AD4	B	273	285	Right-handed alpha
Helix 32	AD5	B	289	295	Right-handed alpha
Helix 33	AD6	B	301	306	Right-handed 310
Helix 34	AD7	B	308	321	Right-handed alpha
Helix 35	AD8	B	337	348	Right-handed alpha
Helix 36	AD9	B	350	355	Right-handed 310
Helix 37	AE1	B	359	366	Right-handed alpha
Helix 38	AE2	B	368	374	Right-handed alpha
Helix 39	AE3	C	55	61	Right-handed alpha
Helix 40	AE4	C	79	92	Right-handed alpha
Helix 41	AE5	C	112	126	Right-handed alpha
Helix 42	AE6	C	137	145	Right-handed alpha
Helix 43	AE7	C	171	175	Right-handed 310
Helix 44	AE8	C	181	194	Right-handed alpha
Helix 45	AE9	C	195	197	Right-handed 310
Helix 46	AF1	C	202	217	Right-handed alpha
Helix 47	AF2	C	222	232	Right-handed alpha
Helix 48	AF3	C	252	257	Right-handed alpha
Helix 49	AF4	C	258	262	Right-handed 310
Helix 50	AF5	C	273	285	Right-handed alpha
Helix 51	AF6	C	289	295	Right-handed alpha
Helix 52	AF7	C	301	306	Right-handed 310
Helix 53	AF8	C	308	321	Right-handed alpha
Helix 54	AF9	C	337	348	Right-handed alpha
Helix 55	AG1	C	350	355	Right-handed 310
Helix 56	AG2	C	359	366	Right-handed alpha
Helix 57	AG3	C	368	374	Right-handed alpha
Helix 58	AG4	D	55	61	Right-handed alpha
Helix 59	AG5	D	79	92	Right-handed alpha
Helix 60	AG6	D	112	126	Right-handed alpha
Helix 61	AG7	D	137	145	Right-handed alpha
Helix 62	AG8	D	171	175	Right-handed 310
Helix 63	AG9	D	181	194	Right-handed alpha
Helix 64	AH1	D	195	197	Right-handed 310
Helix 65	AH2	D	202	217	Right-handed alpha
Helix 66	AH3	D	222	232	Right-handed alpha
Helix 67	AH4	D	252	257	Right-handed alpha
Helix 68	AH5	D	258	262	Right-handed 310
Helix 69	AH6	D	273	285	Right-handed alpha
Helix 70	AH7	D	289	295	Right-handed alpha
Helix 71	AH8	D	301	306	Right-handed 310
Helix 72	AH9	D	308	321	Right-handed alpha
Helix 73	AI1	D	337	348	Right-handed alpha
Helix 74	AI2	D	350	355	Right-handed 310
Helix 75	AI3	D	359	366	Right-handed alpha
Helix 76	AI4	D	368	374	Right-handed alpha
Helix 77	AI5	E	55	61	Right-handed alpha
Helix 78	AI6	E	79	92	Right-handed alpha
Helix 79	AI7	E	112	126	Right-handed alpha
Helix 80	AI8	E	137	145	Right-handed alpha
Helix 81	AI9	E	171	175	Right-handed 310
Helix 82	AJ1	E	181	194	Right-handed alpha
Helix 83	AJ2	E	195	197	Right-handed 310
Helix 84	AJ3	E	202	217	Right-handed alpha
Helix 85	AJ4	E	222	232	Right-handed alpha
Helix 86	AJ5	E	252	257	Right-handed alpha
Helix 87	AJ6	E	258	262	Right-handed 310
Helix 88	AJ7	E	273	285	Right-handed alpha
Helix 89	AJ8	E	289	295	Right-handed alpha
Helix 90	AJ9	E	301	306	Right-handed 310
Helix 91	AK1	E	308	321	Right-handed alpha
Helix 92	AK2	E	337	348	Right-handed alpha
Helix 93	AK3	E	350	355	Right-handed 310
Helix 94	AK4	E	359	366	Right-handed alpha
Helix 95	AK5	E	368	374	Right-handed alpha
Helix 96	AK6	F	55	61	Right-handed alpha
Helix 97	AK7	F	79	92	Right-handed alpha
Helix 98	AK8	F	112	126	Right-handed alpha
Helix 99	AK9	F	137	145	Right-handed alpha
Helix 100	AL1	F	171	175	Right-handed 310
Helix 101	AL2	F	181	194	Right-handed alpha
Helix 102	AL3	F	195	197	Right-handed 310
Helix 103	AL4	F	202	217	Right-handed alpha
Helix 104	AL5	F	222	232	Right-handed alpha
Helix 105	AL6	F	252	257	Right-handed alpha
Helix 106	AL7	F	258	262	Right-handed 310
Helix 107	AL8	F	273	285	Right-handed alpha
Helix 108	AL9	F	289	295	Right-handed alpha
Helix 109	AM1	F	301	306	Right-handed 310
Helix 110	AM2	F	308	321	Right-handed alpha
Helix 111	AM3	F	337	348	Right-handed alpha
Helix 112	AM4	F	350	355	Right-handed 310
Helix 113	AM5	F	359	366	Right-handed alpha
Helix 114	AM6	F	368	374	Right-handed alpha
Helix 115	AM7	G	171	175	Right-handed 310
Helix 116	AM8	G	181	194	Right-handed alpha
Helix 117	AM9	G	195	197	Right-handed 310
Helix 118	AN1	G	202	217	Right-handed alpha
Helix 119	AN2	G	222	232	Right-handed alpha
Helix 120	AN3	G	252	257	Right-handed alpha
Helix 121	AN4	G	258	262	Right-handed 310
Helix 122	AN5	G	273	285	Right-handed alpha
Helix 123	AN6	G	289	295	Right-handed alpha
Helix 124	AN7	G	301	306	Right-handed 310
Helix 125	AN8	G	308	321	Right-handed alpha
Helix 126	AN9	H	55	61	Right-handed alpha
Helix 127	AO1	H	79	92	Right-handed alpha
Helix 128	AO2	H	112	126	Right-handed alpha
Helix 129	AO3	H	137	145	Right-handed alpha
Helix 130	AO4	H	338	348	Right-handed alpha
Helix 131	AO5	H	350	355	Right-handed 310
Helix 132	AO6	H	359	366	Right-handed alpha
Helix 133	AO7	H	368	374	Right-handed alpha
Helix 134	AO8	I	8	20	Right-handed alpha
Helix 135	AO9	I	28	31	Right-handed 310
Helix 136	AP1	I	68	73	Right-handed alpha
Helix 137	AP2	I	110	120	Right-handed alpha
Helix 138	AP3	I	120	126	Right-handed alpha
Helix 139	AP4	I	139	145	Right-handed alpha
Helix 140	AP5	I	146	154	Right-handed alpha

There are 32 sheets in PDB entry 6UBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand
Strand 2	A	8	12	anti-parallel
Strand 3	A	103	107	parallel
Strand 4	A	131	136	parallel
Strand 5	A	357	358	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	65	68	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	8	12	anti-parallel
Strand 3	B	103	107	parallel
Strand 4	B	131	136	parallel
Strand 5	B	357	358	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	65	68	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	8	12	anti-parallel
Strand 3	C	103	107	parallel
Strand 4	C	131	136	parallel
Strand 5	C	357	358	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	65	68	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	160	165	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	247	250	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	8	12	anti-parallel
Strand 3	D	103	107	parallel
Strand 4	D	131	136	parallel
Strand 5	D	357	358	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	65	68	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	178	first strand
Strand 2	D	160	165	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	8	12	anti-parallel
Strand 3	E	103	107	parallel
Strand 4	E	131	136	parallel
Strand 5	E	357	358	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	65	68	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	178	first strand
Strand 2	E	160	165	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	247	250	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	21	first strand
Strand 2	F	8	12	anti-parallel
Strand 3	F	103	107	parallel
Strand 4	F	131	136	parallel
Strand 5	F	357	358	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	65	68	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	178	first strand
Strand 2	F	160	165	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	241	first strand
Strand 2	F	247	250	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	178	first strand
Strand 2	G	160	165	anti-parallel
Strand 3	G	150	155	anti-parallel
Strand 4	G	297	300	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	241	first strand
Strand 2	G	247	250	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	21	first strand
Strand 2	H	8	12	anti-parallel
Strand 3	H	103	107	parallel
Strand 4	H	131	136	parallel
Strand 5	H	357	358	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	65	68	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	6	7	first strand
Strand 2	I	46	48	parallel
Strand 3	I	39	40	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	33	36	first strand
Strand 2	I	54	56	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	81	87	first strand
Strand 2	I	98	104	anti-parallel
Strand 3	I	133	137	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	89	91	first strand
Strand 2	I	158	161	anti-parallel
Strand 3	I	164	165	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBY