Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UBZ entry

There are 3 chains in PDB entry 6UBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 4	TRP 696
B	ALA 698	ASP 816
A	CYS 4	PHE 501

There are141 helices in PDB entry 6UBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	23	27	Right-handed 310
Helix 2	AA2	B	48	59	Right-handed alpha
Helix 3	AA3	B	63	74	Right-handed alpha
Helix 4	AA4	B	84	92	Right-handed alpha
Helix 5	AA5	B	102	112	Right-handed alpha
Helix 6	AA6	B	124	141	Right-handed alpha
Helix 7	AA7	B	193	198	Right-handed 310
Helix 8	AA8	B	208	213	Right-handed alpha
Helix 9	AA9	B	230	235	Right-handed alpha
Helix 10	AB1	B	236	238	Right-handed 310
Helix 11	AB2	B	370	379	Right-handed alpha
Helix 12	AB3	B	380	388	Right-handed 310
Helix 13	AB4	B	391	405	Right-handed alpha
Helix 14	AB5	B	406	408	Right-handed 310
Helix 15	AB6	B	409	415	Right-handed alpha
Helix 16	AB7	B	416	428	Right-handed alpha
Helix 17	AB8	B	429	436	Right-handed 310
Helix 18	AB9	B	438	440	Right-handed 310
Helix 19	AC1	B	441	450	Right-handed alpha
Helix 20	AC2	B	512	516	Right-handed 310
Helix 21	AC3	B	520	533	Right-handed alpha
Helix 22	AC4	B	538	544	Right-handed alpha
Helix 23	AC5	B	547	561	Right-handed alpha
Helix 24	AC6	B	564	576	Right-handed alpha
Helix 25	AC7	B	589	596	Right-handed 310
Helix 26	AC8	B	626	630	Right-handed 310
Helix 27	AC9	B	642	650	Right-handed alpha
Helix 28	AD1	B	656	661	Right-handed 310
Helix 29	AD2	B	674	681	Right-handed alpha
Helix 30	AD3	B	707	712	Right-handed alpha
Helix 31	AD4	B	730	736	Right-handed alpha
Helix 32	AD5	B	737	750	Right-handed alpha
Helix 33	AD6	B	756	759	Right-handed 310
Helix 34	AD7	B	770	783	Right-handed alpha
Helix 35	AD8	B	784	786	Right-handed 310
Helix 36	AD9	A	23	27	Right-handed 310
Helix 37	AE1	A	48	60	Right-handed alpha
Helix 38	AE2	A	62	77	Right-handed alpha
Helix 39	AE3	A	84	92	Right-handed alpha
Helix 40	AE4	A	102	112	Right-handed alpha
Helix 41	AE5	A	122	141	Right-handed alpha
Helix 42	AE6	A	193	198	Right-handed 310
Helix 43	AE7	A	208	213	Right-handed alpha
Helix 44	AE8	A	230	235	Right-handed alpha
Helix 45	AE9	A	236	238	Right-handed 310
Helix 46	AF1	A	370	379	Right-handed alpha
Helix 47	AF2	A	381	388	Right-handed 310
Helix 48	AF3	A	391	405	Right-handed alpha
Helix 49	AF4	A	406	408	Right-handed 310
Helix 50	AF5	A	409	415	Right-handed alpha
Helix 51	AF6	A	416	428	Right-handed alpha
Helix 52	AF7	A	429	436	Right-handed 310
Helix 53	AF8	A	438	440	Right-handed 310
Helix 54	AF9	A	441	450	Right-handed alpha
Helix 55	AG1	A	465	469	Right-handed 310
Helix 56	AG2	A	512	516	Right-handed 310
Helix 57	AG3	A	520	533	Right-handed alpha
Helix 58	AG4	A	538	544	Right-handed alpha
Helix 59	AG5	A	547	562	Right-handed alpha
Helix 60	AG6	A	564	576	Right-handed alpha
Helix 61	AG7	A	589	596	Right-handed 310
Helix 62	AG8	A	626	630	Right-handed 310
Helix 63	AG9	A	642	650	Right-handed alpha
Helix 64	AH1	A	656	661	Right-handed 310
Helix 65	AH2	A	674	681	Right-handed alpha
Helix 66	AH3	A	707	712	Right-handed alpha
Helix 67	AH4	A	730	736	Right-handed alpha
Helix 68	AH5	A	737	750	Right-handed alpha
Helix 69	AH6	A	756	758	Right-handed 310
Helix 70	AH7	A	770	783	Right-handed alpha
Helix 71	AH8	A	784	786	Right-handed 310
Helix 72	AH9	C	23	27	Right-handed 310
Helix 73	AI1	C	48	60	Right-handed alpha
Helix 74	AI2	C	63	77	Right-handed alpha
Helix 75	AI3	C	84	96	Right-handed alpha
Helix 76	AI4	C	102	112	Right-handed alpha
Helix 77	AI5	C	124	141	Right-handed alpha
Helix 78	AI6	C	193	198	Right-handed 310
Helix 79	AI7	C	208	213	Right-handed alpha
Helix 80	AI8	C	230	235	Right-handed alpha
Helix 81	AI9	C	236	238	Right-handed 310
Helix 82	AJ1	C	370	379	Right-handed alpha
Helix 83	AJ2	C	380	388	Right-handed 310
Helix 84	AJ3	C	391	405	Right-handed alpha
Helix 85	AJ4	C	406	408	Right-handed 310
Helix 86	AJ5	C	409	415	Right-handed alpha
Helix 87	AJ6	C	416	428	Right-handed alpha
Helix 88	AJ7	C	429	436	Right-handed 310
Helix 89	AJ8	C	438	440	Right-handed 310
Helix 90	AJ9	C	441	450	Right-handed alpha
Helix 91	AK1	C	512	516	Right-handed 310
Helix 92	AK2	C	520	533	Right-handed alpha
Helix 93	AK3	C	538	544	Right-handed alpha
Helix 94	AK4	C	547	562	Right-handed alpha
Helix 95	AK5	C	564	576	Right-handed alpha
Helix 96	AK6	C	589	596	Right-handed 310
Helix 97	AK7	C	626	630	Right-handed 310
Helix 98	AK8	C	642	650	Right-handed alpha
Helix 99	AK9	C	656	661	Right-handed 310
Helix 100	AL1	C	674	681	Right-handed alpha
Helix 101	AL2	C	707	712	Right-handed alpha
Helix 102	AL3	C	730	736	Right-handed alpha
Helix 103	AL4	C	737	750	Right-handed alpha
Helix 104	AL5	C	756	759	Right-handed 310
Helix 105	AL6	C	770	783	Right-handed alpha
Helix 106	AL7	C	784	786	Right-handed 310
Helix 107	AL8	D	23	27	Right-handed 310
Helix 108	AL9	D	48	60	Right-handed alpha
Helix 109	AM1	D	63	74	Right-handed alpha
Helix 110	AM2	D	84	95	Right-handed alpha
Helix 111	AM3	D	102	111	Right-handed alpha
Helix 112	AM4	D	127	141	Right-handed alpha
Helix 113	AM5	D	193	198	Right-handed 310
Helix 114	AM6	D	208	213	Right-handed alpha
Helix 115	AM7	D	230	235	Right-handed alpha
Helix 116	AM8	D	236	238	Right-handed 310
Helix 117	AM9	D	370	379	Right-handed alpha
Helix 118	AN1	D	381	388	Right-handed 310
Helix 119	AN2	D	391	405	Right-handed alpha
Helix 120	AN3	D	406	408	Right-handed 310
Helix 121	AN4	D	409	415	Right-handed alpha
Helix 122	AN5	D	416	428	Right-handed alpha
Helix 123	AN6	D	429	436	Right-handed 310
Helix 124	AN7	D	438	440	Right-handed 310
Helix 125	AN8	D	441	450	Right-handed alpha
Helix 126	AN9	D	512	516	Right-handed 310
Helix 127	AO1	D	520	533	Right-handed alpha
Helix 128	AO2	D	538	544	Right-handed alpha
Helix 129	AO3	D	547	562	Right-handed alpha
Helix 130	AO4	D	564	576	Right-handed alpha
Helix 131	AO5	D	589	596	Right-handed 310
Helix 132	AO6	D	626	630	Right-handed 310
Helix 133	AO7	D	642	650	Right-handed alpha
Helix 134	AO8	D	656	661	Right-handed 310
Helix 135	AO9	D	674	681	Right-handed alpha
Helix 136	AP1	D	707	712	Right-handed alpha
Helix 137	AP2	D	730	736	Right-handed alpha
Helix 138	AP3	D	737	750	Right-handed alpha
Helix 139	AP4	D	756	759	Right-handed 310
Helix 140	AP5	D	770	783	Right-handed alpha
Helix 141	AP6	D	784	786	Right-handed 310

There are 44 sheets in PDB entry 6UBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	147	155	anti-parallel
Strand 3	B	164	165	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	147	155	parallel
Strand 3	B	295	299	anti-parallel
Strand 4	B	280	289	anti-parallel
Strand 5	B	253	259	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	352	357	parallel
Strand 3	B	328	336	anti-parallel
Strand 4	B	173	182	anti-parallel
Strand 5	B	239	246	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	352	357	parallel
Strand 3	B	328	336	anti-parallel
Strand 4	B	342	345	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	640	641	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	322	323	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	464	first strand
Strand 2	B	472	475	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	605	first strand
Strand 2	B	616	621	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	704	705	first strand
Strand 2	B	753	754	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	724	725	first strand
Strand 2	B	728	729	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	793	first strand
Strand 2	B	805	810	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	147	155	anti-parallel
Strand 3	A	163	165	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	147	155	parallel
Strand 3	A	295	299	anti-parallel
Strand 4	A	280	289	anti-parallel
Strand 5	A	253	259	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	352	357	parallel
Strand 3	A	328	336	anti-parallel
Strand 4	A	173	182	anti-parallel
Strand 5	A	239	246	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	352	357	parallel
Strand 3	A	328	336	anti-parallel
Strand 4	A	342	345	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	640	641	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	322	323	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	464	first strand
Strand 2	A	472	475	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	605	first strand
Strand 2	A	616	621	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	705	first strand
Strand 2	A	753	754	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	724	725	first strand
Strand 2	A	728	729	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	793	first strand
Strand 2	A	805	810	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	9	first strand
Strand 2	C	147	155	anti-parallel
Strand 3	C	164	165	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	147	155	parallel
Strand 3	C	295	299	anti-parallel
Strand 4	C	280	289	anti-parallel
Strand 5	C	253	259	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	352	357	parallel
Strand 3	C	328	336	anti-parallel
Strand 4	C	173	182	anti-parallel
Strand 5	C	239	246	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	352	357	parallel
Strand 3	C	328	336	anti-parallel
Strand 4	C	342	345	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	640	641	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	322	323	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	464	first strand
Strand 2	C	472	475	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	605	first strand
Strand 2	C	616	621	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	704	705	first strand
Strand 2	C	753	754	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	725	first strand
Strand 2	C	728	729	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	793	first strand
Strand 2	C	805	810	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	147	156	anti-parallel
Strand 3	D	162	165	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	29	first strand
Strand 2	D	147	156	parallel
Strand 3	D	295	299	anti-parallel
Strand 4	D	280	289	anti-parallel
Strand 5	D	253	259	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	352	357	parallel
Strand 3	D	328	336	anti-parallel
Strand 4	D	173	182	anti-parallel
Strand 5	D	239	246	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	352	357	parallel
Strand 3	D	328	336	anti-parallel
Strand 4	D	342	345	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	640	641	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	322	323	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	464	first strand
Strand 2	D	472	475	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	605	first strand
Strand 2	D	616	621	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	704	705	first strand
Strand 2	D	753	754	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	724	725	first strand
Strand 2	D	728	729	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	788	793	first strand
Strand 2	D	805	810	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UBZ