Analysis of interatomic Contacts of Structural Units in PDB entry:
6UCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UCB entry

There are 8 chains in PDB entry 6UCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 394	ARG 824
B	THR 394	ARG 824
C	THR 394	ARG 824
E	ALA 2	SER 160
F	ALA 2	SER 159
G	ALA 2	SER 160
H	ALA 2	SER 159
D	THR 394	ARG 824

There are 84 helices in PDB entry 6UCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	417	419	Right-handed 310
Helix 2	AA2	A	423	437	Right-handed alpha
Helix 3	AA3	A	461	469	Right-handed alpha
Helix 4	AA4	A	482	487	Right-handed alpha
Helix 5	AA5	A	515	519	Right-handed 310
Helix 6	AA6	A	522	547	Right-handed alpha
Helix 7	AA7	A	596	629	Right-handed alpha
Helix 8	AA8	A	636	641	Right-handed alpha
Helix 9	AA9	A	653	660	Right-handed alpha
Helix 10	AB1	A	664	676	Right-handed alpha
Helix 11	AB2	A	685	696	Right-handed alpha
Helix 12	AB3	A	706	714	Right-handed alpha
Helix 13	AB4	A	742	756	Right-handed alpha
Helix 14	AB5	A	757	768	Right-handed alpha
Helix 15	AB6	A	788	791	Right-handed 310
Helix 16	AB7	A	792	823	Right-handed alpha
Helix 17	AB8	B	423	437	Right-handed alpha
Helix 18	AB9	B	463	469	Right-handed alpha
Helix 19	AC1	B	482	489	Right-handed alpha
Helix 20	AC2	B	515	519	Right-handed 310
Helix 21	AC3	B	522	542	Right-handed alpha
Helix 22	AC4	B	599	627	Right-handed alpha
Helix 23	AC5	B	635	642	Right-handed alpha
Helix 24	AC6	B	653	661	Right-handed alpha
Helix 25	AC7	B	666	676	Right-handed alpha
Helix 26	AC8	B	685	696	Right-handed alpha
Helix 27	AC9	B	706	715	Right-handed alpha
Helix 28	AD1	B	741	757	Right-handed alpha
Helix 29	AD2	B	757	768	Right-handed alpha
Helix 30	AD3	B	788	791	Right-handed 310
Helix 31	AD4	B	792	824	Right-handed alpha
Helix 32	AD5	C	417	419	Right-handed 310
Helix 33	AD6	C	423	437	Right-handed alpha
Helix 34	AD7	C	461	469	Right-handed alpha
Helix 35	AD8	C	482	487	Right-handed alpha
Helix 36	AD9	C	515	519	Right-handed 310
Helix 37	AE1	C	522	547	Right-handed alpha
Helix 38	AE2	C	596	629	Right-handed alpha
Helix 39	AE3	C	636	641	Right-handed alpha
Helix 40	AE4	C	653	660	Right-handed alpha
Helix 41	AE5	C	664	676	Right-handed alpha
Helix 42	AE6	C	685	696	Right-handed alpha
Helix 43	AE7	C	706	714	Right-handed alpha
Helix 44	AE8	C	742	756	Right-handed alpha
Helix 45	AE9	C	757	768	Right-handed alpha
Helix 46	AF1	C	788	791	Right-handed 310
Helix 47	AF2	C	792	823	Right-handed alpha
Helix 48	AF3	E	5	35	Right-handed alpha
Helix 49	AF4	E	51	67	Right-handed alpha
Helix 50	AF5	E	68	85	Right-handed alpha
Helix 51	AF6	E	87	93	Right-handed alpha
Helix 52	AF7	E	94	107	Right-handed alpha
Helix 53	AF8	E	127	158	Right-handed alpha
Helix 54	AF9	F	5	38	Right-handed alpha
Helix 55	AG1	F	49	67	Right-handed alpha
Helix 56	AG2	F	68	85	Right-handed alpha
Helix 57	AG3	F	89	106	Right-handed alpha
Helix 58	AG4	F	125	158	Right-handed alpha
Helix 59	AG5	G	5	35	Right-handed alpha
Helix 60	AG6	G	51	67	Right-handed alpha
Helix 61	AG7	G	68	85	Right-handed alpha
Helix 62	AG8	G	87	93	Right-handed alpha
Helix 63	AG9	G	94	107	Right-handed alpha
Helix 64	AH1	G	127	158	Right-handed alpha
Helix 65	AH2	H	5	38	Right-handed alpha
Helix 66	AH3	H	49	67	Right-handed alpha
Helix 67	AH4	H	68	85	Right-handed alpha
Helix 68	AH5	H	89	106	Right-handed alpha
Helix 69	AH6	H	125	158	Right-handed alpha
Helix 70	AH7	D	423	437	Right-handed alpha
Helix 71	AH8	D	463	469	Right-handed alpha
Helix 72	AH9	D	482	489	Right-handed alpha
Helix 73	AI1	D	515	519	Right-handed 310
Helix 74	AI2	D	522	542	Right-handed alpha
Helix 75	AI3	D	599	627	Right-handed alpha
Helix 76	AI4	D	635	642	Right-handed alpha
Helix 77	AI5	D	653	661	Right-handed alpha
Helix 78	AI6	D	666	676	Right-handed alpha
Helix 79	AI7	D	685	696	Right-handed alpha
Helix 80	AI8	D	706	715	Right-handed alpha
Helix 81	AI9	D	741	757	Right-handed alpha
Helix 82	AJ1	D	757	768	Right-handed alpha
Helix 83	AJ2	D	788	791	Right-handed 310
Helix 84	AJ3	D	792	824	Right-handed alpha

There are 24 sheets in PDB entry 6UCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	395	399	parallel
Strand 3	A	474	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	498	first strand
Strand 2	A	730	732	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	704	705	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	720	721	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	702	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	440	441	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	460	462	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	735	736	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	504	anti-parallel
Strand 4	B	721	723	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	395	399	parallel
Strand 3	C	474	475	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	498	first strand
Strand 2	C	730	732	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	501	first strand
Strand 2	C	704	705	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	504	505	first strand
Strand 2	C	720	721	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	702	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	396	first strand
Strand 2	D	440	441	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	453	first strand
Strand 2	D	460	462	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	491	first strand
Strand 2	D	735	736	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	504	anti-parallel
Strand 4	D	721	723	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UCB