Analysis of interatomic Contacts of Structural Units in PDB entry:
6UCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UCU entry

There are 10 chains in PDB entry 6UCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 49GLY 373
B
 SER 86ASP 135
C
 GLU 13TRP 49
D
 PHE 27LEU 61
E
 ASP 11VAL 60
I
 HIS 49GLY 373
J
 SER 86ASP 135
K
 GLU 13TRP 49
L
 PHE 27LEU 61
M
 ASP 11VAL 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 6UCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 56Right-handed alpha
Helix 2
AA2
A
67 72Right-handed alpha
Helix 3
AA3
A
364 373Right-handed alpha
Helix 4
AA4
B
87 135Right-handed alpha
Helix 5
AA5
C
14 49Right-handed alpha
Helix 6
AA6
D
30 51Right-handed alpha
Helix 7
AA7
D
51 57Right-handed alpha
Helix 8
AA8
E
12 43Right-handed alpha
Helix 9
AA9
E
49 55Right-handed alpha
Helix 10
AB1
I
50 56Right-handed alpha
Helix 11
AB2
I
67 72Right-handed alpha
Helix 12
AB3
I
364 373Right-handed alpha
Helix 13
AB4
J
87 135Right-handed alpha
Helix 14
AB5
K
14 49Right-handed alpha
Helix 15
AB6
L
30 51Right-handed alpha
Helix 16
AB7
L
51 57Right-handed alpha
Helix 17
AB8
M
12 43Right-handed alpha
Helix 18
AB9
M
49 55Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6UCU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 93first strand
Strand 2
A
97 106anti-parallel
Strand 3
A
114 121anti-parallel
Strand 4
A
125 132anti-parallel
Strand 5
A
137 143anti-parallel
Strand 6
A
150 157anti-parallel
Strand 7
A
164 172anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
193 203anti-parallel
Strand 10
A
209 219anti-parallel
Strand 11
A
227 237anti-parallel
Strand 12
A
243 249anti-parallel
Strand 13
A
255 264anti-parallel
Strand 14
A
267 275anti-parallel
Strand 15
A
299 308anti-parallel
Strand 16
A
312 319anti-parallel
Strand 17
A
323 331anti-parallel
Strand 18
A
337 345anti-parallel
Strand 19
A
350 362anti-parallel
Strand 20
A
83 93parallel
Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
83 93first strand
Strand 2
I
97 106anti-parallel
Strand 3
I
114 121anti-parallel
Strand 4
I
125 132anti-parallel
Strand 5
I
137 143anti-parallel
Strand 6
I
150 157anti-parallel
Strand 7
I
164 172anti-parallel
Strand 8
I
176 187anti-parallel
Strand 9
I
193 203anti-parallel
Strand 10
I
209 219anti-parallel
Strand 11
I
227 237anti-parallel
Strand 12
I
243 249anti-parallel
Strand 13
I
255 264anti-parallel
Strand 14
I
267 275anti-parallel
Strand 15
I
299 308anti-parallel
Strand 16
I
312 319anti-parallel
Strand 17
I
323 331anti-parallel
Strand 18
I
337 345anti-parallel
Strand 19
I
350 362anti-parallel
Strand 20
I
83 93parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il