Analysis of interatomic Contacts of Structural Units in PDB entry:
6UDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UDE entry

There are 3 chains in PDB entry 6UDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	ASP 499
B	ASN 3	ASP 499
C	GLU 4	ARG 317

There are 76 helices in PDB entry 6UDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	69	Right-handed alpha
Helix 2	AA2	A	109	119	Right-handed alpha
Helix 3	AA3	A	121	130	Right-handed alpha
Helix 4	AA4	A	137	149	Right-handed alpha
Helix 5	AA5	A	151	158	Right-handed alpha
Helix 6	AA6	A	165	175	Right-handed alpha
Helix 7	AA7	A	184	188	Right-handed alpha
Helix 8	AA8	A	201	209	Right-handed alpha
Helix 9	AA9	A	211	215	Right-handed 310
Helix 10	AB1	A	245	253	Right-handed alpha
Helix 11	AB2	A	309	319	Right-handed alpha
Helix 12	AB3	A	327	334	Right-handed alpha
Helix 13	AB4	A	372	400	Right-handed alpha
Helix 14	AB5	A	410	414	Right-handed 310
Helix 15	AB6	A	415	427	Right-handed alpha
Helix 16	AB7	A	437	451	Right-handed alpha
Helix 17	AB8	A	456	461	Right-handed alpha
Helix 18	AB9	A	462	464	Right-handed 310
Helix 19	AC1	A	475	494	Right-handed alpha
Helix 20	AC2	B	49	68	Right-handed alpha
Helix 21	AC3	B	71	73	Right-handed 310
Helix 22	AC4	B	109	119	Right-handed alpha
Helix 23	AC5	B	121	130	Right-handed alpha
Helix 24	AC6	B	137	149	Right-handed alpha
Helix 25	AC7	B	151	158	Right-handed alpha
Helix 26	AC8	B	165	175	Right-handed alpha
Helix 27	AC9	B	184	188	Right-handed alpha
Helix 28	AD1	B	201	208	Right-handed alpha
Helix 29	AD2	B	211	215	Right-handed 310
Helix 30	AD3	B	245	253	Right-handed alpha
Helix 31	AD4	B	309	319	Right-handed alpha
Helix 32	AD5	B	327	334	Right-handed alpha
Helix 33	AD6	B	372	400	Right-handed alpha
Helix 34	AD7	B	410	414	Right-handed 310
Helix 35	AD8	B	415	427	Right-handed alpha
Helix 36	AD9	B	437	451	Right-handed alpha
Helix 37	AE1	B	456	462	Right-handed alpha
Helix 38	AE2	B	475	494	Right-handed alpha
Helix 39	AE3	C	49	68	Right-handed alpha
Helix 40	AE4	C	71	73	Right-handed 310
Helix 41	AE5	C	109	119	Right-handed alpha
Helix 42	AE6	C	121	130	Right-handed alpha
Helix 43	AE7	C	137	149	Right-handed alpha
Helix 44	AE8	C	151	158	Right-handed alpha
Helix 45	AE9	C	165	175	Right-handed alpha
Helix 46	AF1	C	184	188	Right-handed alpha
Helix 47	AF2	C	201	209	Right-handed alpha
Helix 48	AF3	C	211	215	Right-handed 310
Helix 49	AF4	C	245	253	Right-handed alpha
Helix 50	AF5	C	309	319	Right-handed alpha
Helix 51	AF6	C	327	334	Right-handed alpha
Helix 52	AF7	C	372	400	Right-handed alpha
Helix 53	AF8	C	410	414	Right-handed 310
Helix 54	AF9	C	415	427	Right-handed alpha
Helix 55	AG1	C	437	451	Right-handed alpha
Helix 56	AG2	C	456	462	Right-handed alpha
Helix 57	AG3	C	475	494	Right-handed alpha
Helix 58	AG4	D	49	69	Right-handed alpha
Helix 59	AG5	D	109	119	Right-handed alpha
Helix 60	AG6	D	121	130	Right-handed alpha
Helix 61	AG7	D	137	149	Right-handed alpha
Helix 62	AG8	D	151	158	Right-handed alpha
Helix 63	AG9	D	165	175	Right-handed alpha
Helix 64	AH1	D	184	188	Right-handed alpha
Helix 65	AH2	D	201	209	Right-handed alpha
Helix 66	AH3	D	211	215	Right-handed 310
Helix 67	AH4	D	245	253	Right-handed alpha
Helix 68	AH5	D	309	319	Right-handed alpha
Helix 69	AH6	D	327	334	Right-handed alpha
Helix 70	AH7	D	372	400	Right-handed alpha
Helix 71	AH8	D	410	414	Right-handed 310
Helix 72	AH9	D	415	427	Right-handed alpha
Helix 73	AI1	D	437	452	Right-handed alpha
Helix 74	AI2	D	456	461	Right-handed alpha
Helix 75	AI3	D	462	464	Right-handed 310
Helix 76	AI4	D	475	494	Right-handed alpha

There are 26 sheets in PDB entry 6UDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	35	first strand
Strand 2	A	16	22	anti-parallel
Strand 3	A	6	12	anti-parallel
Strand 4	A	75	82	parallel
Strand 5	A	238	244	parallel
Strand 6	A	222	227	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	101	102	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	161	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	217	219	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	199	200	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	294	first strand
Strand 2	A	297	306	anti-parallel
Strand 3	A	269	276	anti-parallel
Strand 4	A	261	265	anti-parallel
Strand 5	A	405	409	parallel
Strand 6	A	429	433	parallel
Strand 7	A	466	470	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	362	367	anti-parallel
Strand 3	C	362	367	anti-parallel
Strand 4	C	343	345	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	35	first strand
Strand 2	B	16	22	anti-parallel
Strand 3	B	6	12	anti-parallel
Strand 4	B	75	82	parallel
Strand 5	B	238	244	parallel
Strand 6	B	222	227	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	101	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	161	164	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	217	219	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	199	200	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	294	first strand
Strand 2	B	297	306	anti-parallel
Strand 3	B	269	274	anti-parallel
Strand 4	B	261	265	anti-parallel
Strand 5	B	405	409	parallel
Strand 6	B	429	433	parallel
Strand 7	B	466	470	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	345	first strand
Strand 2	B	362	367	anti-parallel
Strand 3	D	362	367	anti-parallel
Strand 4	D	343	345	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	16	22	anti-parallel
Strand 3	C	6	12	anti-parallel
Strand 4	C	75	82	parallel
Strand 5	C	238	244	parallel
Strand 6	C	222	227	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	101	102	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	161	164	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	217	219	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	199	200	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	294	first strand
Strand 2	C	297	306	anti-parallel
Strand 3	C	269	276	anti-parallel
Strand 4	C	261	265	anti-parallel
Strand 5	C	405	409	parallel
Strand 6	C	429	433	parallel
Strand 7	C	466	470	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	35	first strand
Strand 2	D	16	22	anti-parallel
Strand 3	D	6	12	anti-parallel
Strand 4	D	75	82	parallel
Strand 5	D	238	244	parallel
Strand 6	D	222	227	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	101	102	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	161	164	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	217	219	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	199	200	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	294	first strand
Strand 2	D	297	306	anti-parallel
Strand 3	D	269	276	anti-parallel
Strand 4	D	261	265	anti-parallel
Strand 5	D	405	409	parallel
Strand 6	D	429	433	parallel
Strand 7	D	466	470	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UDE