Analysis of interatomic Contacts of Structural Units in PDB entry:
6UDK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UDK entry

There are 18 chains in PDB entry 6UDK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 31	VAL 505
K	ALA 31	VAL 505
R	ALA 31	VAL 505
A	GLN 1	ALA 114
B	VAL 8	GLY 108
F	GLN 1	ALA 114
I	VAL 8	GLY 108
O	GLN 1	ALA 114
P	VAL 8	GLY 108
M	GLY 2	SER 113
N	GLU 1	LYS 107
D	GLY 2	SER 113
E	GLU 1	LYS 107
H	GLY 2	SER 113
L	GLU 1	LYS 107
C	SER 519	LEU 663
J	SER 519	LEU 663
Q	SER 519	LEU 663

There are 35 helices in PDB entry 6UDK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	103	115	Right-handed alpha
Helix 2	AA2	G	335	350	Right-handed alpha
Helix 3	AA3	G	368	373	Right-handed alpha
Helix 4	AA4	G	387	391	Right-handed 310
Helix 5	AA5	G	425	429	Right-handed 310
Helix 6	AA6	G	474	478	Right-handed 310
Helix 7	AA7	K	103	115	Right-handed alpha
Helix 8	AA8	K	335	350	Right-handed alpha
Helix 9	AA9	K	368	373	Right-handed alpha
Helix 10	AB1	K	387	391	Right-handed 310
Helix 11	AB2	K	475	480	Right-handed alpha
Helix 12	AB3	R	103	113	Right-handed alpha
Helix 13	AB4	R	114	116	Right-handed 310
Helix 14	AB5	R	335	350	Right-handed alpha
Helix 15	AB6	R	351	353	Right-handed 310
Helix 16	AB7	R	474	478	Right-handed 310
Helix 17	AB8	O	60	64	Right-handed 310
Helix 18	AB9	N	79	83	Right-handed 310
Helix 19	AC1	C	537	542	Right-handed alpha
Helix 20	AC2	C	570	593	Right-handed alpha
Helix 21	AC3	C	618	623	Right-handed alpha
Helix 22	AC4	C	627	633	Right-handed alpha
Helix 23	AC5	C	638	662	Right-handed alpha
Helix 24	AC6	J	537	542	Right-handed alpha
Helix 25	AC7	J	570	593	Right-handed alpha
Helix 26	AC8	J	627	633	Right-handed alpha
Helix 27	AC9	J	635	637	Right-handed 310
Helix 28	AD1	J	638	662	Right-handed alpha
Helix 29	AD2	Q	532	536	Right-handed 310
Helix 30	AD3	Q	537	542	Right-handed alpha
Helix 31	AD4	Q	570	593	Right-handed alpha
Helix 32	AD5	Q	618	623	Right-handed alpha
Helix 33	AD6	Q	627	633	Right-handed alpha
Helix 34	AD7	Q	635	637	Right-handed 310
Helix 35	AD8	Q	638	662	Right-handed alpha

There are 66 sheets in PDB entry 6UDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	499	first strand
Strand 2	G	35	40	anti-parallel
Strand 3	C	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	93	first strand
Strand 2	G	237	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	121	first strand
Strand 2	G	201	203	anti-parallel
Strand 3	G	433	435	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	176	first strand
Strand 2	G	155	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	189	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	287	anti-parallel
Strand 3	G	453	456	anti-parallel
Strand 4	G	468	470	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	374	378	first strand
Strand 2	G	381	385	anti-parallel
Strand 3	G	413	420	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	292	298	anti-parallel
Strand 6	G	443	449	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	307	first strand
Strand 2	G	317	320	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	35	40	first strand
Strand 2	K	494	499	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	45	46	first strand
Strand 2	K	486	491	anti-parallel
Strand 3	K	223	228	anti-parallel
Strand 4	K	242	245	anti-parallel
Strand 5	K	84	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	55	first strand
Strand 2	K	216	218	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	93	first strand
Strand 2	K	237	239	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	169	176	first strand
Strand 2	K	155	162	anti-parallel
Strand 3	K	129	133	anti-parallel
Strand 4	K	189	193	anti-parallel
Strand 5	K	181	183	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	200	203	first strand
Strand 2	K	432	435	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	259	261	first strand
Strand 2	K	444	456	anti-parallel
Strand 3	K	465	469	anti-parallel
Strand 4	K	358	361	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	284	285	first strand
Strand 2	K	444	456	anti-parallel
Strand 3	K	292	297	anti-parallel
Strand 4	K	330	334	anti-parallel
Strand 5	K	413	420	anti-parallel
Strand 6	K	381	385	anti-parallel
Strand 7	K	374	378	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	307	first strand
Strand 2	K	317	320	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	35	40	first strand
Strand 2	R	494	499	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	45	47	first strand
Strand 2	R	486	491	anti-parallel
Strand 3	R	223	228	anti-parallel
Strand 4	R	242	245	anti-parallel
Strand 5	R	84	85	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	53	55	first strand
Strand 2	R	216	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	91	94	first strand
Strand 2	R	236	239	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	169	176	first strand
Strand 2	R	155	162	anti-parallel
Strand 3	R	129	133	anti-parallel
Strand 4	R	189	193	anti-parallel
Strand 5	R	181	183	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	201	203	first strand
Strand 2	R	433	435	parallel
Strand 3	R	423	424	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	271	273	first strand
Strand 2	R	284	287	anti-parallel
Strand 3	R	452	454	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	374	378	first strand
Strand 2	R	381	385	anti-parallel
Strand 3	R	417	420	anti-parallel
Strand 4	R	329	334	anti-parallel
Strand 5	R	413	414	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	374	378	first strand
Strand 2	R	381	385	anti-parallel
Strand 3	R	417	420	anti-parallel
Strand 4	R	329	334	anti-parallel
Strand 5	R	293	297	anti-parallel
Strand 6	R	444	448	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	302	307	first strand
Strand 2	R	317	322	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	360	361	first strand
Strand 2	R	467	468	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	21	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	108	111	parallel
Strand 3	A	88	93	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	45	50	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	100	100	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	102	104	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	73	75	anti-parallel
Strand 3	B	62	63	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	49	first strand
Strand 2	B	34	38	anti-parallel
Strand 3	B	85	89	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	21	25	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	108	111	parallel
Strand 3	F	88	93	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	45	50	anti-parallel
Strand 6	F	58	59	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	72	first strand
Strand 2	F	77	82	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	96	100	first strand
Strand 2	F	100	100	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	11	first strand
Strand 2	I	102	104	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	22	first strand
Strand 2	I	72	75	anti-parallel
Strand 3	I	62	63	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	49	first strand
Strand 2	I	34	38	anti-parallel
Strand 3	I	85	89	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	7	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	77	82	anti-parallel
Strand 4	O	67	72	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	11	12	first strand
Strand 2	O	108	111	parallel
Strand 3	O	88	93	anti-parallel
Strand 4	O	35	39	anti-parallel
Strand 5	O	45	50	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	96	100	first strand
Strand 2	O	100	100	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	9	13	first strand
Strand 2	P	102	106	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	20	21	first strand
Strand 2	P	73	75	anti-parallel
Strand 3	P	62	63	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	45	49	first strand
Strand 2	P	32	38	anti-parallel
Strand 3	P	85	91	anti-parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	11	12	first strand
Strand 2	M	102	111	parallel
Strand 3	M	88	95	anti-parallel
Strand 4	M	35	39	anti-parallel
Strand 5	M	46	51	anti-parallel
Strand 6	M	57	58	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	19	first strand
Strand 2	M	81	82	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	63	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	66	67	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	13	first strand
Strand 2	N	104	106	parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	49	anti-parallel
Strand 3	N	33	38	anti-parallel
Strand 4	N	85	90	anti-parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	103	111	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	46	47	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	81	82	anti-parallel
Strand 3	D	67	68	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	57	58	anti-parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	63	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	66	67	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	33	37	anti-parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	6	first strand
Strand 2	H	22	24	anti-parallel

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There are 6 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	102	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	19	first strand
Strand 2	H	81	82	anti-parallel

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There are 3 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	63	anti-parallel

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There are 3 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	66	67	anti-parallel

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There are 5 strands in AH3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	37	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	102	103	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 6UDK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UDK