Analysis of interatomic Contacts of Structural Units in PDB entry:
6UDM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UDM entry

There are 4 chains in PDB entry 6UDM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 37	SER 512
B	LEU 37	SER 512
C	LEU 37	SER 512
D	LEU 37	SER 512

There are 98 helices in PDB entry 6UDM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	56	Right-handed alpha
Helix 2	AA2	A	58	71	Right-handed alpha
Helix 3	AA3	A	88	97	Right-handed alpha
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	109	114	Right-handed alpha
Helix 6	AA6	A	115	119	Right-handed 310
Helix 7	AA7	A	128	145	Right-handed alpha
Helix 8	AA8	A	157	180	Right-handed alpha
Helix 9	AA9	A	185	204	Right-handed alpha
Helix 10	AB1	A	211	219	Right-handed alpha
Helix 11	AB2	A	223	229	Right-handed alpha
Helix 12	AB3	A	232	237	Right-handed alpha
Helix 13	AB4	A	238	243	Right-handed alpha
Helix 14	AB5	A	245	271	Right-handed alpha
Helix 15	AB6	A	280	291	Right-handed alpha
Helix 16	AB7	A	303	309	Right-handed alpha
Helix 17	AB8	A	309	336	Right-handed alpha
Helix 18	AB9	A	336	351	Right-handed alpha
Helix 19	AC1	A	358	364	Right-handed 310
Helix 20	AC2	A	365	380	Right-handed alpha
Helix 21	AC3	A	410	417	Right-handed alpha
Helix 22	AC4	A	428	433	Right-handed 310
Helix 23	AC5	A	440	445	Right-handed alpha
Helix 24	AC6	A	452	456	Right-handed 310
Helix 25	AC7	A	459	477	Right-handed alpha
Helix 26	AC8	B	51	56	Right-handed alpha
Helix 27	AC9	B	58	71	Right-handed alpha
Helix 28	AD1	B	88	97	Right-handed alpha
Helix 29	AD2	B	99	104	Right-handed alpha
Helix 30	AD3	B	110	119	Right-handed 310
Helix 31	AD4	B	128	145	Right-handed alpha
Helix 32	AD5	B	157	180	Right-handed alpha
Helix 33	AD6	B	185	204	Right-handed alpha
Helix 34	AD7	B	211	219	Right-handed alpha
Helix 35	AD8	B	223	229	Right-handed alpha
Helix 36	AD9	B	232	237	Right-handed alpha
Helix 37	AE1	B	238	242	Right-handed 310
Helix 38	AE2	B	245	271	Right-handed alpha
Helix 39	AE3	B	280	292	Right-handed alpha
Helix 40	AE4	B	303	309	Right-handed alpha
Helix 41	AE5	B	309	336	Right-handed alpha
Helix 42	AE6	B	336	351	Right-handed alpha
Helix 43	AE7	B	358	364	Right-handed 310
Helix 44	AE8	B	365	380	Right-handed alpha
Helix 45	AE9	B	410	417	Right-handed alpha
Helix 46	AF1	B	428	433	Right-handed 310
Helix 47	AF2	B	440	445	Right-handed alpha
Helix 48	AF3	B	452	456	Right-handed 310
Helix 49	AF4	B	459	477	Right-handed alpha
Helix 50	AF5	C	51	56	Right-handed alpha
Helix 51	AF6	C	58	71	Right-handed alpha
Helix 52	AF7	C	88	97	Right-handed alpha
Helix 53	AF8	C	99	103	Right-handed 310
Helix 54	AF9	C	110	119	Right-handed 310
Helix 55	AG1	C	128	146	Right-handed alpha
Helix 56	AG2	C	157	180	Right-handed alpha
Helix 57	AG3	C	185	204	Right-handed alpha
Helix 58	AG4	C	211	219	Right-handed alpha
Helix 59	AG5	C	223	229	Right-handed alpha
Helix 60	AG6	C	232	237	Right-handed alpha
Helix 61	AG7	C	238	243	Right-handed alpha
Helix 62	AG8	C	245	271	Right-handed alpha
Helix 63	AG9	C	280	290	Right-handed alpha
Helix 64	AH1	C	303	309	Right-handed alpha
Helix 65	AH2	C	309	336	Right-handed alpha
Helix 66	AH3	C	336	351	Right-handed alpha
Helix 67	AH4	C	358	364	Right-handed 310
Helix 68	AH5	C	365	380	Right-handed alpha
Helix 69	AH6	C	410	417	Right-handed alpha
Helix 70	AH7	C	428	433	Right-handed 310
Helix 71	AH8	C	440	445	Right-handed alpha
Helix 72	AH9	C	452	456	Right-handed 310
Helix 73	AI1	C	459	477	Right-handed alpha
Helix 74	AI2	D	51	56	Right-handed alpha
Helix 75	AI3	D	58	71	Right-handed alpha
Helix 76	AI4	D	88	97	Right-handed alpha
Helix 77	AI5	D	99	103	Right-handed 310
Helix 78	AI6	D	109	114	Right-handed alpha
Helix 79	AI7	D	115	119	Right-handed 310
Helix 80	AI8	D	128	145	Right-handed alpha
Helix 81	AI9	D	157	180	Right-handed alpha
Helix 82	AJ1	D	185	204	Right-handed alpha
Helix 83	AJ2	D	211	219	Right-handed alpha
Helix 84	AJ3	D	223	229	Right-handed alpha
Helix 85	AJ4	D	232	237	Right-handed alpha
Helix 86	AJ5	D	238	242	Right-handed 310
Helix 87	AJ6	D	245	271	Right-handed alpha
Helix 88	AJ7	D	280	288	Right-handed alpha
Helix 89	AJ8	D	304	309	Right-handed alpha
Helix 90	AJ9	D	309	336	Right-handed alpha
Helix 91	AK1	D	336	351	Right-handed alpha
Helix 92	AK2	D	358	364	Right-handed 310
Helix 93	AK3	D	365	380	Right-handed alpha
Helix 94	AK4	D	410	417	Right-handed alpha
Helix 95	AK5	D	428	433	Right-handed 310
Helix 96	AK6	D	440	445	Right-handed alpha
Helix 97	AK7	D	452	456	Right-handed 310
Helix 98	AK8	D	459	477	Right-handed alpha

There are 13 sheets in PDB entry 6UDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	81	86	anti-parallel
Strand 3	A	406	409	parallel
Strand 4	A	388	389	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	399	401	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	481	first strand
Strand 2	A	507	510	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	81	86	anti-parallel
Strand 3	B	406	409	parallel
Strand 4	B	388	389	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	399	401	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	481	first strand
Strand 2	B	507	510	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	78	first strand
Strand 2	C	81	86	anti-parallel
Strand 3	C	406	409	parallel
Strand 4	C	388	389	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	399	401	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	481	first strand
Strand 2	C	507	510	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	78	first strand
Strand 2	D	81	86	anti-parallel
Strand 3	D	406	409	parallel
Strand 4	D	388	389	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	399	401	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	481	first strand
Strand 2	D	507	510	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	493	first strand
Strand 2	D	499	500	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UDM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UDM