Analysis of interatomic Contacts of Structural Units in PDB entry:
6UE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UE4 entry

There are 2 chains in PDB entry 6UE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 72	SER 425
B	PRO 72	MET 426

There are 15 helices in PDB entry 6UE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	92	Right-handed alpha
Helix 2	AA2	A	94	106	Right-handed alpha
Helix 3	AA3	A	110	114	Right-handed 310
Helix 4	AA4	A	176	184	Right-handed alpha
Helix 5	AA5	A	187	199	Right-handed alpha
Helix 6	AA6	A	203	208	Right-handed alpha
Helix 7	AA7	A	402	404	Right-handed 310
Helix 8	AA8	A	405	425	Right-handed alpha
Helix 9	AA9	B	83	92	Right-handed alpha
Helix 10	AB1	B	94	106	Right-handed alpha
Helix 11	AB2	B	110	114	Right-handed 310
Helix 12	AB3	B	176	185	Right-handed alpha
Helix 13	AB4	B	187	199	Right-handed alpha
Helix 14	AB5	B	402	404	Right-handed 310
Helix 15	AB6	B	405	426	Right-handed alpha

There are 10 sheets in PDB entry 6UE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	130	138	anti-parallel
Strand 4	A	141	147	anti-parallel
Strand 5	A	153	159	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	243	249	anti-parallel
Strand 3	A	226	240	anti-parallel
Strand 4	A	213	223	anti-parallel
Strand 5	A	163	172	anti-parallel
Strand 6	B	293	297	anti-parallel
Strand 7	B	283	288	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	300	303	anti-parallel
Strand 3	A	376	383	anti-parallel
Strand 4	A	339	346	anti-parallel
Strand 5	A	328	335	anti-parallel
Strand 6	A	316	324	anti-parallel
Strand 7	A	356	357	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	300	303	anti-parallel
Strand 3	A	376	383	anti-parallel
Strand 4	A	386	388	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	293	297	anti-parallel
Strand 3	B	163	172	anti-parallel
Strand 4	B	213	223	anti-parallel
Strand 5	B	226	240	anti-parallel
Strand 6	B	243	249	anti-parallel
Strand 7	B	255	256	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	311	first strand
Strand 2	A	362	365	anti-parallel
Strand 3	A	348	349	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	77	first strand
Strand 2	B	119	123	anti-parallel
Strand 3	B	132	136	anti-parallel
Strand 4	B	141	147	anti-parallel
Strand 5	B	153	159	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	300	303	anti-parallel
Strand 3	B	376	383	anti-parallel
Strand 4	B	339	346	anti-parallel
Strand 5	B	328	335	anti-parallel
Strand 6	B	316	324	anti-parallel
Strand 7	B	356	357	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	280	first strand
Strand 2	B	300	303	anti-parallel
Strand 3	B	376	383	anti-parallel
Strand 4	B	386	388	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	311	first strand
Strand 2	B	362	365	anti-parallel
Strand 3	B	348	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UE4