Analysis of interatomic Contacts of Structural Units in PDB entry:
6UE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UE8 entry

There are 10 chains in PDB entry 6UE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 242	ALA 465
B	CYS 242	TYR 472
C	SER 2	GLU 545
D	GLU 4	ASP 137
F	CYS 242	TYR 472
G	CYS 242	TYR 472
E	CYS 242	TYR 472
H	CYS 242	ALA 465
K	CYS 242	MET 464
L	CYS 242	ALA 465

There are 42 helices in PDB entry 6UE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	252	258	Right-handed alpha
Helix 2	AA2	A	312	317	Right-handed alpha
Helix 3	AA3	A	391	395	Right-handed 310
Helix 4	AA4	A	421	427	Right-handed alpha
Helix 5	AA5	B	252	258	Right-handed alpha
Helix 6	AA6	B	312	318	Right-handed alpha
Helix 7	AA7	B	357	362	Right-handed alpha
Helix 8	AA8	B	391	393	Right-handed 310
Helix 9	AA9	B	422	427	Right-handed alpha
Helix 10	AB1	C	27	33	Right-handed alpha
Helix 11	AB2	C	242	246	Right-handed 310
Helix 12	AB3	C	272	276	Right-handed 310
Helix 13	AB4	C	298	302	Right-handed 310
Helix 14	AB5	C	356	360	Right-handed 310
Helix 15	AB6	C	467	472	Right-handed 310
Helix 16	AB7	C	517	521	Right-handed 310
Helix 17	AB8	D	64	69	Right-handed alpha
Helix 18	AB9	F	253	258	Right-handed alpha
Helix 19	AC1	F	312	318	Right-handed alpha
Helix 20	AC2	F	355	360	Right-handed alpha
Helix 21	AC3	F	391	393	Right-handed 310
Helix 22	AC4	F	421	427	Right-handed alpha
Helix 23	AC5	G	252	257	Right-handed alpha
Helix 24	AC6	G	355	360	Right-handed alpha
Helix 25	AC7	G	421	427	Right-handed alpha
Helix 26	AC8	E	312	316	Right-handed 310
Helix 27	AC9	E	357	362	Right-handed alpha
Helix 28	AD1	E	391	395	Right-handed 310
Helix 29	AD2	E	421	427	Right-handed alpha
Helix 30	AD3	H	252	258	Right-handed alpha
Helix 31	AD4	H	298	300	Right-handed 310
Helix 32	AD5	H	311	316	Right-handed alpha
Helix 33	AD6	H	357	362	Right-handed alpha
Helix 34	AD7	H	391	395	Right-handed 310
Helix 35	AD8	H	421	427	Right-handed alpha
Helix 36	AD9	K	252	258	Right-handed alpha
Helix 37	AE1	K	312	318	Right-handed alpha
Helix 38	AE2	K	356	362	Right-handed alpha
Helix 39	AE3	K	420	427	Right-handed alpha
Helix 40	AE4	L	252	256	Right-handed 310
Helix 41	AE5	L	356	360	Right-handed 310
Helix 42	AE6	L	421	426	Right-handed alpha

There are 53 sheets in PDB entry 6UE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	265	269	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	320	324	anti-parallel
Strand 3	A	335	339	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	410	420	anti-parallel
Strand 4	A	396	397	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	410	420	anti-parallel
Strand 4	A	401	403	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	444	448	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	B	458	464	parallel
Strand 3	A	457	463	parallel
Strand 4	K	457	463	parallel
Strand 5	L	457	463	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	264	271	anti-parallel
Strand 3	B	302	308	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	321	324	anti-parallel
Strand 3	B	335	338	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	364	374	anti-parallel
Strand 3	B	415	420	anti-parallel
Strand 4	B	395	397	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	364	374	anti-parallel
Strand 3	B	411	413	anti-parallel
Strand 4	B	401	402	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	444	448	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	110	parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	36	39	anti-parallel
Strand 5	C	48	51	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	74	79	anti-parallel
Strand 3	C	64	69	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	218	220	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	188	189	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	151	first strand
Strand 2	C	154	156	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	C	321	328	parallel
Strand 3	C	304	309	anti-parallel
Strand 4	C	250	254	anti-parallel
Strand 5	C	262	265	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	239	first strand
Strand 2	C	290	295	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	343	first strand
Strand 2	C	433	439	parallel
Strand 3	C	419	424	anti-parallel
Strand 4	C	365	366	anti-parallel
Strand 5	C	381	382	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	354	first strand
Strand 2	C	405	411	anti-parallel
Strand 3	C	395	398	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	462	first strand
Strand 2	C	511	513	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	484	487	first strand
Strand 2	C	474	481	anti-parallel
Strand 3	C	523	530	anti-parallel
Strand 4	C	533	541	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	16	23	anti-parallel
Strand 3	D	33	43	anti-parallel
Strand 4	F	457	465	parallel
Strand 5	G	457	463	parallel
Strand 6	H	457	463	parallel
Strand 7	E	458	463	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	78	first strand
Strand 2	D	83	86	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	114	first strand
Strand 2	D	125	128	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	247	first strand
Strand 2	F	266	271	anti-parallel
Strand 3	F	302	306	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	279	280	first strand
Strand 2	F	324	325	anti-parallel
Strand 3	F	334	335	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	352	first strand
Strand 2	F	364	374	anti-parallel
Strand 3	F	411	420	anti-parallel
Strand 4	F	395	397	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	352	first strand
Strand 2	F	364	374	anti-parallel
Strand 3	F	411	420	anti-parallel
Strand 4	F	401	402	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	388	389	first strand
Strand 2	F	380	385	anti-parallel
Strand 3	F	430	435	anti-parallel
Strand 4	F	443	448	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	322	323	first strand
Strand 2	G	336	337	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	352	first strand
Strand 2	G	364	374	anti-parallel
Strand 3	G	411	420	anti-parallel
Strand 4	G	396	397	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	352	first strand
Strand 2	G	364	374	anti-parallel
Strand 3	G	411	420	anti-parallel
Strand 4	G	401	402	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	388	389	first strand
Strand 2	G	380	385	anti-parallel
Strand 3	G	430	435	anti-parallel
Strand 4	G	443	448	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	249	first strand
Strand 2	E	265	269	anti-parallel
Strand 3	E	305	306	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	297	first strand
Strand 2	E	301	303	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	352	first strand
Strand 2	E	364	372	anti-parallel
Strand 3	E	410	420	anti-parallel
Strand 4	E	396	397	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	352	first strand
Strand 2	E	364	372	anti-parallel
Strand 3	E	410	420	anti-parallel
Strand 4	E	401	403	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	388	389	first strand
Strand 2	E	380	385	anti-parallel
Strand 3	E	430	435	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	245	249	first strand
Strand 2	H	265	269	anti-parallel
Strand 3	H	302	307	anti-parallel
Strand 4	H	295	296	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	320	322	first strand
Strand 2	H	337	339	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	348	352	first strand
Strand 2	H	364	374	anti-parallel
Strand 3	H	410	420	anti-parallel
Strand 4	H	396	397	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	348	352	first strand
Strand 2	H	364	374	anti-parallel
Strand 3	H	410	420	anti-parallel
Strand 4	H	401	403	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	388	389	first strand
Strand 2	H	380	385	anti-parallel
Strand 3	H	430	435	anti-parallel
Strand 4	H	443	448	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	247	248	first strand
Strand 2	K	265	268	anti-parallel
Strand 3	K	301	307	anti-parallel
Strand 4	K	290	291	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	247	248	first strand
Strand 2	K	265	268	anti-parallel
Strand 3	K	301	307	anti-parallel
Strand 4	K	295	297	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	281	first strand
Strand 2	K	322	326	anti-parallel
Strand 3	K	334	337	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	348	352	first strand
Strand 2	K	365	372	anti-parallel
Strand 3	K	411	419	anti-parallel
Strand 4	K	395	397	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	348	352	first strand
Strand 2	K	365	372	anti-parallel
Strand 3	K	411	419	anti-parallel
Strand 4	K	401	402	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	388	389	first strand
Strand 2	K	380	385	anti-parallel
Strand 3	K	430	435	anti-parallel
Strand 4	K	443	448	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	350	351	first strand
Strand 2	L	364	372	anti-parallel
Strand 3	L	411	420	anti-parallel
Strand 4	L	396	397	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	350	351	first strand
Strand 2	L	364	372	anti-parallel
Strand 3	L	411	420	anti-parallel
Strand 4	L	401	402	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	388	389	first strand
Strand 2	L	380	385	anti-parallel
Strand 3	L	430	435	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UE8