Analysis of interatomic Contacts of Structural Units in PDB entry:
6UEK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UEK entry

There are 3 chains in PDB entry 6UEK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LEU 672
B	SER 3	VAL 671
C	SER 3	PRO 18

There are119 helices in PDB entry 6UEK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed 310
Helix 2	AA2	A	41	54	Right-handed alpha
Helix 3	AA3	A	55	56	Right-handed 310
Helix 4	AA4	A	57	59	Right-handed 310
Helix 5	AA5	A	60	76	Right-handed alpha
Helix 6	AA6	A	80	84	Right-handed 310
Helix 7	AA7	A	94	98	Right-handed 310
Helix 8	AA8	A	102	116	Right-handed alpha
Helix 9	AA9	A	123	126	Right-handed 310
Helix 10	AB1	A	139	153	Right-handed alpha
Helix 11	AB2	A	187	191	Right-handed 310
Helix 12	AB3	A	192	202	Right-handed alpha
Helix 13	AB4	A	220	239	Right-handed alpha
Helix 14	AB5	A	257	259	Right-handed 310
Helix 15	AB6	A	260	268	Right-handed alpha
Helix 16	AB7	A	278	288	Right-handed alpha
Helix 17	AB8	A	297	311	Right-handed alpha
Helix 18	AB9	A	322	333	Right-handed alpha
Helix 19	AC1	A	361	372	Right-handed alpha
Helix 20	AC2	A	372	396	Right-handed alpha
Helix 21	AC3	A	407	416	Right-handed alpha
Helix 22	AC4	A	436	441	Right-handed alpha
Helix 23	AC5	A	441	448	Right-handed alpha
Helix 24	AC6	A	461	480	Right-handed alpha
Helix 25	AC7	A	484	502	Right-handed alpha
Helix 26	AC8	A	503	505	Right-handed 310
Helix 27	AC9	A	518	536	Right-handed alpha
Helix 28	AD1	A	567	571	Right-handed 310
Helix 29	AD2	A	572	584	Right-handed alpha
Helix 30	AD3	A	615	640	Right-handed alpha
Helix 31	AD4	A	642	656	Right-handed alpha
Helix 32	AD5	B	6	13	Right-handed 310
Helix 33	AD6	B	41	54	Right-handed alpha
Helix 34	AD7	B	55	56	Right-handed 310
Helix 35	AD8	B	57	59	Right-handed 310
Helix 36	AD9	B	60	76	Right-handed alpha
Helix 37	AE1	B	80	84	Right-handed 310
Helix 38	AE2	B	94	98	Right-handed 310
Helix 39	AE3	B	102	116	Right-handed alpha
Helix 40	AE4	B	123	126	Right-handed 310
Helix 41	AE5	B	139	153	Right-handed alpha
Helix 42	AE6	B	187	191	Right-handed 310
Helix 43	AE7	B	192	202	Right-handed alpha
Helix 44	AE8	B	220	238	Right-handed alpha
Helix 45	AE9	B	257	259	Right-handed 310
Helix 46	AF1	B	260	268	Right-handed alpha
Helix 47	AF2	B	278	289	Right-handed alpha
Helix 48	AF3	B	297	311	Right-handed alpha
Helix 49	AF4	B	322	332	Right-handed alpha
Helix 50	AF5	B	361	372	Right-handed alpha
Helix 51	AF6	B	372	396	Right-handed alpha
Helix 52	AF7	B	407	414	Right-handed alpha
Helix 53	AF8	B	436	441	Right-handed alpha
Helix 54	AF9	B	441	449	Right-handed alpha
Helix 55	AG1	B	461	481	Right-handed alpha
Helix 56	AG2	B	484	502	Right-handed alpha
Helix 57	AG3	B	518	536	Right-handed alpha
Helix 58	AG4	B	567	571	Right-handed 310
Helix 59	AG5	B	572	584	Right-handed alpha
Helix 60	AG6	B	615	640	Right-handed alpha
Helix 61	AG7	B	645	656	Right-handed alpha
Helix 62	AG8	C	6	13	Right-handed 310
Helix 63	AG9	C	41	53	Right-handed alpha
Helix 64	AH1	C	54	56	Right-handed 310
Helix 65	AH2	C	60	75	Right-handed alpha
Helix 66	AH3	C	80	84	Right-handed 310
Helix 67	AH4	C	94	98	Right-handed 310
Helix 68	AH5	C	102	116	Right-handed alpha
Helix 69	AH6	C	123	126	Right-handed 310
Helix 70	AH7	C	139	153	Right-handed alpha
Helix 71	AH8	C	187	191	Right-handed 310
Helix 72	AH9	C	192	202	Right-handed alpha
Helix 73	AI1	C	219	222	Right-handed 310
Helix 74	AI2	C	223	238	Right-handed alpha
Helix 75	AI3	C	257	259	Right-handed 310
Helix 76	AI4	C	260	269	Right-handed alpha
Helix 77	AI5	C	278	288	Right-handed alpha
Helix 78	AI6	C	297	311	Right-handed alpha
Helix 79	AI7	C	322	330	Right-handed alpha
Helix 80	AI8	C	361	372	Right-handed alpha
Helix 81	AI9	C	372	398	Right-handed alpha
Helix 82	AJ1	C	407	415	Right-handed alpha
Helix 83	AJ2	C	442	449	Right-handed alpha
Helix 84	AJ3	C	461	480	Right-handed alpha
Helix 85	AJ4	C	484	500	Right-handed alpha
Helix 86	AJ5	C	501	505	Right-handed 310
Helix 87	AJ6	C	518	535	Right-handed alpha
Helix 88	AJ7	C	567	571	Right-handed 310
Helix 89	AJ8	C	572	584	Right-handed alpha
Helix 90	AJ9	C	615	641	Right-handed alpha
Helix 91	AK1	C	645	656	Right-handed alpha
Helix 92	AK2	D	8	13	Right-handed 310
Helix 93	AK3	D	41	54	Right-handed alpha
Helix 94	AK4	D	55	56	Right-handed 310
Helix 95	AK5	D	57	59	Right-handed 310
Helix 96	AK6	D	60	75	Right-handed alpha
Helix 97	AK7	D	80	84	Right-handed 310
Helix 98	AK8	D	94	98	Right-handed 310
Helix 99	AK9	D	102	115	Right-handed alpha
Helix 100	AL1	D	123	126	Right-handed 310
Helix 101	AL2	D	139	153	Right-handed alpha
Helix 102	AL3	D	187	191	Right-handed 310
Helix 103	AL4	D	192	202	Right-handed alpha
Helix 104	AL5	D	220	238	Right-handed alpha
Helix 105	AL6	D	260	268	Right-handed alpha
Helix 106	AL7	D	278	288	Right-handed alpha
Helix 107	AL8	D	297	312	Right-handed alpha
Helix 108	AL9	D	322	327	Right-handed alpha
Helix 109	AM1	D	361	372	Right-handed alpha
Helix 110	AM2	D	372	393	Right-handed alpha
Helix 111	AM3	D	407	414	Right-handed alpha
Helix 112	AM4	D	441	448	Right-handed alpha
Helix 113	AM5	D	461	473	Right-handed alpha
Helix 114	AM6	D	490	497	Right-handed alpha
Helix 115	AM7	D	518	535	Right-handed alpha
Helix 116	AM8	D	567	571	Right-handed 310
Helix 117	AM9	D	572	584	Right-handed alpha
Helix 118	AN1	D	615	641	Right-handed alpha
Helix 119	AN2	D	642	656	Right-handed alpha

There are 16 sheets in PDB entry 6UEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	134	135	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	517	first strand
Strand 2	A	451	457	anti-parallel
Strand 3	A	542	545	anti-parallel
Strand 4	A	604	612	anti-parallel
Strand 5	A	554	555	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	517	first strand
Strand 2	A	451	457	anti-parallel
Strand 3	A	542	545	anti-parallel
Strand 4	A	604	612	anti-parallel
Strand 5	A	589	594	anti-parallel
Strand 6	A	179	183	parallel
Strand 7	A	157	162	parallel
Strand 8	A	165	171	anti-parallel
Strand 9	B	660	661	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	315	320	parallel
Strand 3	A	271	276	parallel
Strand 4	A	248	252	parallel
Strand 5	A	340	341	parallel
Strand 6	A	400	401	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	179	183	parallel
Strand 5	B	589	594	parallel
Strand 6	B	604	612	anti-parallel
Strand 7	B	542	545	anti-parallel
Strand 8	B	451	457	anti-parallel
Strand 9	B	512	517	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	B	165	171	anti-parallel
Strand 3	B	157	162	anti-parallel
Strand 4	B	179	183	parallel
Strand 5	B	589	594	parallel
Strand 6	B	604	612	anti-parallel
Strand 7	B	554	555	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	134	135	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	295	first strand
Strand 2	B	315	320	parallel
Strand 3	B	271	276	parallel
Strand 4	B	248	252	parallel
Strand 5	B	340	341	parallel
Strand 6	B	400	401	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	134	135	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	517	first strand
Strand 2	C	451	457	anti-parallel
Strand 3	C	542	546	anti-parallel
Strand 4	C	604	612	anti-parallel
Strand 5	C	554	555	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	517	first strand
Strand 2	C	451	457	anti-parallel
Strand 3	C	542	546	anti-parallel
Strand 4	C	604	612	anti-parallel
Strand 5	C	589	594	anti-parallel
Strand 6	C	179	183	parallel
Strand 7	C	157	162	parallel
Strand 8	C	165	171	anti-parallel
Strand 9	D	660	661	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	295	first strand
Strand 2	C	315	320	parallel
Strand 3	C	271	276	parallel
Strand 4	C	248	252	parallel
Strand 5	C	340	341	parallel
Strand 6	C	400	401	parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	661	first strand
Strand 2	D	165	171	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	179	183	parallel
Strand 5	D	589	594	parallel
Strand 6	D	604	612	anti-parallel
Strand 7	D	542	545	anti-parallel
Strand 8	D	451	457	anti-parallel
Strand 9	D	512	517	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	661	first strand
Strand 2	D	165	171	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	179	183	parallel
Strand 5	D	589	594	parallel
Strand 6	D	604	612	anti-parallel
Strand 7	D	554	555	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	134	135	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	320	first strand
Strand 2	D	271	276	parallel
Strand 3	D	248	252	parallel
Strand 4	D	340	343	parallel
Strand 5	D	401	403	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UEK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UEK