Analysis of interatomic Contacts of Structural Units in PDB entry:
6UG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UG1 entry

There are 5 chains in PDB entry 6UG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 129ILE 632
X
 ALA 255ASP 311
Y
 G 3 A 23
W
 T 2 C 7
W
 A 9 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6UG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
133 163Right-handed alpha
Helix 2
AA2
A
164 173Right-handed alpha
Helix 3
AA3
A
176 184Right-handed alpha
Helix 4
AA4
A
191 214Right-handed alpha
Helix 5
AA5
A
229 239Right-handed alpha
Helix 6
AA6
A
246 258Right-handed alpha
Helix 7
AA7
A
261 276Right-handed alpha
Helix 8
AA8
A
306 310Right-handed alpha
Helix 9
AA9
A
353 357Right-handed 310
Helix 10
AB1
A
375 380Right-handed alpha
Helix 11
AB2
A
386 394Right-handed 310
Helix 12
AB3
A
395 410Right-handed alpha
Helix 13
AB4
A
415 431Right-handed alpha
Helix 14
AB5
A
438 442Right-handed 310
Helix 15
AB6
A
451 453Right-handed 310
Helix 16
AB7
A
493 498Right-handed alpha
Helix 17
AB8
A
563 567Right-handed 310
Helix 18
AB9
A
578 586Right-handed alpha
Helix 19
AC1
A
618 628Right-handed alpha
Helix 20
AC2
A
629 632Right-handed 310
Helix 21
AC3
X
258 272Right-handed alpha
Helix 22
AC4
X
275 287Right-handed alpha
Helix 23
AC5
X
289 297Right-handed alpha
Helix 24
AC6
X
297 307Right-handed alpha
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There are 6 sheets in PDB entry 6UG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
259 260parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
326 331anti-parallel
Strand 3
A
315 321anti-parallel
Strand 4
A
280 286anti-parallel
Strand 5
A
362 366anti-parallel
Strand 6
A
372 374anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
467 470anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
487 492anti-parallel
Strand 3
A
530 533anti-parallel
Strand 4
A
511 512anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
537 539anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
592 594parallel
Strand 3
A
609 615anti-parallel
Strand 4
A
571 575anti-parallel
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