Analysis of interatomic Contacts of Structural Units in PDB entry:
6UGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UGF entry

There are 7 chains in PDB entry 6UGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 156MET 472
B
 LEU 156MET 472
C
 LEU 156MET 472
D
 LEU 156MET 472
E
 LEU 156MET 472
F
 LEU 156MET 472
G
 GLU 3GLU 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 93 helices in PDB entry 6UGF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
174 179Right-handed alpha
Helix 2
AA2
A
180 182Right-handed 310
Helix 3
AA3
A
198 209Right-handed alpha
Helix 4
AA4
A
210 215Right-handed alpha
Helix 5
AA5
A
238 250Right-handed alpha
Helix 6
AA6
A
271 285Right-handed alpha
Helix 7
AA7
A
293 298Right-handed alpha
Helix 8
AA8
A
307 320Right-handed alpha
Helix 9
AA9
A
346 351Right-handed alpha
Helix 10
AB1
A
363 375Right-handed alpha
Helix 11
AB2
A
385 392Right-handed alpha
Helix 12
AB3
A
397 416Right-handed alpha
Helix 13
AB4
A
425 436Right-handed alpha
Helix 14
AB5
A
439 448Right-handed alpha
Helix 15
AB6
A
457 469Right-handed alpha
Helix 16
AB7
B
159 163Right-handed 310
Helix 17
AB8
B
171 181Right-handed alpha
Helix 18
AB9
B
198 210Right-handed alpha
Helix 19
AC1
B
210 215Right-handed alpha
Helix 20
AC2
B
238 249Right-handed alpha
Helix 21
AC3
B
269 282Right-handed alpha
Helix 22
AC4
B
309 321Right-handed alpha
Helix 23
AC5
B
347 353Right-handed alpha
Helix 24
AC6
B
365 375Right-handed alpha
Helix 25
AC7
B
385 393Right-handed alpha
Helix 26
AC8
B
400 415Right-handed alpha
Helix 27
AC9
B
427 434Right-handed alpha
Helix 28
AD1
B
440 448Right-handed alpha
Helix 29
AD2
B
457 470Right-handed alpha
Helix 30
AD3
C
159 163Right-handed 310
Helix 31
AD4
C
171 182Right-handed alpha
Helix 32
AD5
C
198 207Right-handed alpha
Helix 33
AD6
C
210 215Right-handed alpha
Helix 34
AD7
C
220 224Right-handed 310
Helix 35
AD8
C
240 249Right-handed alpha
Helix 36
AD9
C
271 285Right-handed alpha
Helix 37
AE1
C
308 321Right-handed alpha
Helix 38
AE2
C
365 375Right-handed alpha
Helix 39
AE3
C
385 394Right-handed alpha
Helix 40
AE4
C
399 411Right-handed alpha
Helix 41
AE5
C
428 434Right-handed alpha
Helix 42
AE6
C
439 448Right-handed alpha
Helix 43
AE7
C
456 470Right-handed alpha
Helix 44
AE8
D
159 163Right-handed 310
Helix 45
AE9
D
171 180Right-handed alpha
Helix 46
AF1
D
191 195Right-handed 310
Helix 47
AF2
D
198 207Right-handed alpha
Helix 48
AF3
D
210 215Right-handed alpha
Helix 49
AF4
D
238 250Right-handed alpha
Helix 50
AF5
D
271 285Right-handed alpha
Helix 51
AF6
D
293 298Right-handed alpha
Helix 52
AF7
D
307 309Right-handed 310
Helix 53
AF8
D
310 321Right-handed alpha
Helix 54
AF9
D
341 345Right-handed 310
Helix 55
AG1
D
366 375Right-handed alpha
Helix 56
AG2
D
385 393Right-handed alpha
Helix 57
AG3
D
397 414Right-handed alpha
Helix 58
AG4
D
429 434Right-handed alpha
Helix 59
AG5
D
439 450Right-handed alpha
Helix 60
AG6
D
457 470Right-handed alpha
Helix 61
AG7
E
159 163Right-handed 310
Helix 62
AG8
E
171 180Right-handed alpha
Helix 63
AG9
E
198 207Right-handed alpha
Helix 64
AH1
E
209 215Right-handed alpha
Helix 65
AH2
E
220 224Right-handed 310
Helix 66
AH3
E
240 249Right-handed alpha
Helix 67
AH4
E
269 285Right-handed alpha
Helix 68
AH5
E
294 297Right-handed 310
Helix 69
AH6
E
309 322Right-handed alpha
Helix 70
AH7
E
341 345Right-handed 310
Helix 71
AH8
E
346 351Right-handed alpha
Helix 72
AH9
E
363 375Right-handed alpha
Helix 73
AI1
E
385 393Right-handed alpha
Helix 74
AI2
E
399 416Right-handed alpha
Helix 75
AI3
E
429 434Right-handed alpha
Helix 76
AI4
E
439 449Right-handed alpha
Helix 77
AI5
E
456 470Right-handed alpha
Helix 78
AI6
F
159 163Right-handed 310
Helix 79
AI7
F
173 180Right-handed alpha
Helix 80
AI8
F
191 195Right-handed 310
Helix 81
AI9
F
198 207Right-handed alpha
Helix 82
AJ1
F
210 215Right-handed alpha
Helix 83
AJ2
F
238 250Right-handed alpha
Helix 84
AJ3
F
270 284Right-handed alpha
Helix 85
AJ4
F
293 298Right-handed alpha
Helix 86
AJ5
F
310 321Right-handed alpha
Helix 87
AJ6
F
348 353Right-handed alpha
Helix 88
AJ7
F
364 375Right-handed alpha
Helix 89
AJ8
F
385 392Right-handed alpha
Helix 90
AJ9
F
399 416Right-handed alpha
Helix 91
AK1
F
426 432Right-handed alpha
Helix 92
AK2
F
439 448Right-handed alpha
Helix 93
AK3
F
455 470Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6UGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
334 338parallel
Strand 3
A
288 292parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 257first strand
Strand 2
B
289 292parallel
Strand 3
B
335 339parallel
Strand 4
B
230 232parallel
Strand 5
B
356 358parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 232first strand
Strand 2
C
335 339parallel
Strand 3
C
290 292parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
228 232first strand
Strand 2
D
333 339parallel
Strand 3
D
287 292parallel
Strand 4
D
254 258parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
254 257first strand
Strand 2
E
288 292parallel
Strand 3
E
334 339parallel
Strand 4
E
229 232parallel
Strand 5
E
356 358parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
254 257first strand
Strand 2
F
287 292parallel
Strand 3
F
333 339parallel
Strand 4
F
230 232parallel
Strand 5
F
356 358parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il