Analysis of interatomic Contacts of Structural Units in PDB entry:
6UGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UGM entry

There are 10 chains in PDB entry 6UGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	ARG 134
B	LYS 20	GLY 101
C	ALA 12	LYS 118
D	THR 29	ALA 121
E	HIS 39	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 118
H	SER 29	ALA 121
I	T 2	T 147
J	A 1	C 48

There are 61 helices in PDB entry 6UGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	55	Right-handed alpha
Helix 2	AA2	A	64	76	Right-handed alpha
Helix 3	AA3	A	86	113	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	54	Right-handed alpha
Helix 8	AA8	B	54	75	Right-handed alpha
Helix 9	AA9	B	83	94	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	33	Right-handed alpha
Helix 12	AB3	C	46	72	Right-handed alpha
Helix 13	AB4	C	79	88	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	53	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	120	Right-handed alpha
Helix 18	AB9	E	46	56	Right-handed alpha
Helix 19	AC1	E	63	75	Right-handed alpha
Helix 20	AC2	E	96	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	53	77	Right-handed alpha
Helix 25	AC7	F	82	93	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	33	Right-handed alpha
Helix 28	AD1	G	46	72	Right-handed alpha
Helix 29	AD2	G	79	88	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	53	74	Right-handed alpha
Helix 33	AD6	H	76	81	Right-handed alpha
Helix 34	AD7	H	89	99	Right-handed alpha
Helix 35	AD8	H	100	102	Right-handed 310
Helix 36	AD9	H	103	121	Right-handed alpha
Helix 37	AE1	M	727	732	Right-handed alpha
Helix 38	AE2	M	738	744	Right-handed alpha
Helix 39	AE3	M	894	908	Right-handed alpha
Helix 40	AE4	M	931	935	Right-handed 310
Helix 41	AE5	N	3	8	Right-handed alpha
Helix 42	AE6	N	355	359	Right-handed 310
Helix 43	AE7	N	376	380	Right-handed 310
Helix 44	AE8	N	429	433	Right-handed 310
Helix 45	AE9	X	199	211	Right-handed alpha
Helix 46	AF1	X	213	218	Right-handed alpha
Helix 47	AF2	X	219	224	Right-handed 310
Helix 48	AF3	X	296	300	Right-handed 310
Helix 49	AF4	X	303	317	Right-handed alpha
Helix 50	AF5	X	318	324	Right-handed alpha
Helix 51	AF6	L	194	209	Right-handed alpha
Helix 52	AF7	L	229	238	Right-handed alpha
Helix 53	AF8	L	382	398	Right-handed alpha
Helix 54	AF9	O	86	91	Right-handed alpha
Helix 55	AG1	O	92	94	Right-handed 310
Helix 56	AG2	O	97	104	Right-handed alpha
Helix 57	AG3	O	114	126	Right-handed alpha
Helix 58	AG4	P	79	83	Right-handed alpha
Helix 59	AG5	P	89	93	Right-handed 310
Helix 60	AG6	P	95	104	Right-handed alpha
Helix 61	AG7	P	117	122	Right-handed alpha

There are 29 sheets in PDB entry 6UGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	22	first strand
Strand 2	K	322	325	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	36	first strand
Strand 2	K	42	47	anti-parallel
Strand 3	K	50	55	anti-parallel
Strand 4	K	62	64	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	77	first strand
Strand 2	K	83	88	anti-parallel
Strand 3	K	92	97	anti-parallel
Strand 4	K	102	105	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	129	first strand
Strand 2	K	133	138	anti-parallel
Strand 3	K	144	148	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	159	first strand
Strand 2	K	167	172	anti-parallel
Strand 3	K	178	181	anti-parallel
Strand 4	K	187	190	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	206	211	first strand
Strand 2	K	217	222	anti-parallel
Strand 3	K	227	231	anti-parallel
Strand 4	K	237	241	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	258	260	first strand
Strand 2	K	270	272	anti-parallel
Strand 3	K	281	282	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	305	306	first strand
Strand 2	K	313	314	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	861	864	first strand
Strand 2	M	870	873	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	885	887	first strand
Strand 2	M	956	958	anti-parallel
Strand 3	M	945	947	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	892	893	first strand
Strand 2	M	921	922	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	345	349	anti-parallel
Strand 3	N	334	338	anti-parallel
Strand 4	N	327	329	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	35	first strand
Strand 2	N	41	46	anti-parallel
Strand 3	N	54	55	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	76	81	first strand
Strand 2	N	87	92	anti-parallel
Strand 3	N	97	101	anti-parallel
Strand 4	N	108	110	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	118	123	first strand
Strand 2	N	129	133	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	140	141	first strand
Strand 2	N	154	155	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	174	first strand
Strand 2	N	181	186	anti-parallel
Strand 3	N	191	195	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	221	224	first strand
Strand 2	N	230	234	anti-parallel
Strand 3	N	240	247	anti-parallel
Strand 4	N	260	268	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	277	282	first strand
Strand 2	N	289	294	anti-parallel
Strand 3	N	302	306	anti-parallel
Strand 4	N	312	316	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	55	first strand
Strand 2	L	256	262	anti-parallel
Strand 3	L	248	253	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	57	58	first strand
Strand 2	L	69	70	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	88	89	first strand
Strand 2	L	96	99	anti-parallel
Strand 3	L	362	365	anti-parallel
Strand 4	L	118	125	anti-parallel
Strand 5	L	184	191	anti-parallel
Strand 6	L	289	291	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	105	114	first strand
Strand 2	L	350	357	anti-parallel
Strand 3	L	133	140	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	165	167	first strand
Strand 2	L	170	172	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	271	272	first strand
Strand 2	L	281	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UGM