Analysis of interatomic Contacts of Structural Units in PDB entry:
6UHC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UHC entry

There are 9 chains in PDB entry 6UHC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	GLY 415
B	ARG 6	LYS 388
C	MET 1	LYS 372
D	MET 1	ASP 283
E	PRO 2	SER 174
F	ALA 3	PHE 168
G	PHE 11	VAL 151
H	GLY 462	ASP 501
I	PRO 459	ASP 501

There are 76 helices in PDB entry 6UHC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	59	Right-handed 310
Helix 2	AA2	A	64	67	Right-handed 310
Helix 3	AA3	A	85	99	Right-handed alpha
Helix 4	AA4	A	104	108	Right-handed 310
Helix 5	AA5	A	119	124	Right-handed alpha
Helix 6	AA6	A	124	132	Right-handed alpha
Helix 7	AA7	A	144	152	Right-handed alpha
Helix 8	AA8	A	153	155	Right-handed 310
Helix 9	AA9	A	196	212	Right-handed alpha
Helix 10	AB1	A	216	218	Right-handed 310
Helix 11	AB2	A	219	232	Right-handed alpha
Helix 12	AB3	A	237	248	Right-handed alpha
Helix 13	AB4	A	276	281	Right-handed alpha
Helix 14	AB5	A	282	283	Right-handed 310
Helix 15	AB6	A	284	288	Right-handed 310
Helix 16	AB7	A	295	307	Right-handed alpha
Helix 17	AB8	A	308	310	Right-handed 310
Helix 18	AB9	A	311	317	Right-handed alpha
Helix 19	AC1	A	323	327	Right-handed 310
Helix 20	AC2	A	330	353	Right-handed alpha
Helix 21	AC3	A	375	387	Right-handed alpha
Helix 22	AC4	A	388	394	Right-handed alpha
Helix 23	AC5	A	397	403	Right-handed alpha
Helix 24	AC6	A	404	410	Right-handed 310
Helix 25	AC7	B	58	64	Right-handed alpha
Helix 26	AC8	B	81	94	Right-handed alpha
Helix 27	AC9	B	101	104	Right-handed 310
Helix 28	AD1	B	116	130	Right-handed alpha
Helix 29	AD2	B	143	148	Right-handed alpha
Helix 30	AD3	B	175	179	Right-handed 310
Helix 31	AD4	B	185	200	Right-handed alpha
Helix 32	AD5	B	209	221	Right-handed alpha
Helix 33	AD6	B	226	237	Right-handed alpha
Helix 34	AD7	B	256	261	Right-handed alpha
Helix 35	AD8	B	262	266	Right-handed 310
Helix 36	AD9	B	277	288	Right-handed alpha
Helix 37	AE1	B	290	299	Right-handed alpha
Helix 38	AE2	B	305	309	Right-handed 310
Helix 39	AE3	B	312	329	Right-handed alpha
Helix 40	AE4	B	353	365	Right-handed alpha
Helix 41	AE5	B	375	380	Right-handed alpha
Helix 42	AE6	C	232	234	Right-handed 310
Helix 43	AE7	C	359	366	Right-handed alpha
Helix 44	AE8	D	8	23	Right-handed alpha
Helix 45	AE9	D	48	51	Right-handed 310
Helix 46	AF1	D	63	69	Right-handed alpha
Helix 47	AF2	D	71	81	Right-handed alpha
Helix 48	AF3	D	106	115	Right-handed alpha
Helix 49	AF4	D	115	122	Right-handed alpha
Helix 50	AF5	D	122	135	Right-handed alpha
Helix 51	AF6	D	171	187	Right-handed alpha
Helix 52	AF7	D	228	233	Right-handed alpha
Helix 53	AF8	D	236	245	Right-handed alpha
Helix 54	AF9	D	246	281	Right-handed alpha
Helix 55	AG1	E	40	53	Right-handed alpha
Helix 56	AG2	E	62	83	Right-handed alpha
Helix 57	AG3	E	87	101	Right-handed alpha
Helix 58	AG4	E	123	149	Right-handed alpha
Helix 59	AG5	E	157	162	Right-handed alpha
Helix 60	AG6	E	167	171	Right-handed 310
Helix 61	AG7	F	4	20	Right-handed alpha
Helix 62	AG8	F	36	41	Right-handed alpha
Helix 63	AG9	F	43	47	Right-handed 310
Helix 64	AH1	F	80	97	Right-handed alpha
Helix 65	AH2	F	120	126	Right-handed alpha
Helix 66	AH3	F	127	166	Right-handed alpha
Helix 67	AH4	G	38	49	Right-handed alpha
Helix 68	AH5	G	50	59	Right-handed alpha
Helix 69	AH6	G	68	86	Right-handed alpha
Helix 70	AH7	G	87	89	Right-handed 310
Helix 71	AH8	G	90	96	Right-handed alpha
Helix 72	AH9	G	99	114	Right-handed alpha
Helix 73	AI1	G	120	147	Right-handed alpha
Helix 74	AI2	H	463	467	Right-handed alpha
Helix 75	AI3	H	471	476	Right-handed alpha
Helix 76	AI4	I	460	475	Right-handed alpha

There are 21 sheets in PDB entry 6UHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	110	114	parallel
Strand 5	A	138	143	parallel
Strand 6	A	395	396	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	175	180	anti-parallel
Strand 3	A	165	170	anti-parallel
Strand 4	A	319	322	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	17	21	anti-parallel
Strand 3	B	10	13	anti-parallel
Strand 4	B	106	111	parallel
Strand 5	B	135	140	parallel
Strand 6	B	373	374	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	36	39	anti-parallel
Strand 3	B	68	71	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	164	166	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	251	254	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	344	349	anti-parallel
Strand 4	C	329	336	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	31	38	anti-parallel
Strand 4	C	41	49	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	61	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	85	91	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	110	114	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	131	137	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	150	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	167	170	anti-parallel
Strand 4	C	194	197	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	237	241	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	254	first strand
Strand 2	C	257	262	anti-parallel
Strand 3	C	268	273	anti-parallel
Strand 4	C	278	284	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	41	46	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	93	98	anti-parallel
Strand 5	D	84	85	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	147	first strand
Strand 2	D	150	156	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	220	227	anti-parallel
Strand 5	D	197	201	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	19	20	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	60	66	anti-parallel
Strand 3	F	69	75	anti-parallel
Strand 4	F	114	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UHC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UHC