Analysis of interatomic Contacts of Structural Units in PDB entry:
6UI1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UI1 entry

There are 4 chains in PDB entry 6UI1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 866
B	GLN 1	SER 114
C	GLN 1	SER 123
D	GLN 3	LYS 120

There are 41 helices in PDB entry 6UI1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	100	Right-handed alpha
Helix 2	AA2	A	101	114	Right-handed alpha
Helix 3	AA3	A	130	132	Right-handed 310
Helix 4	AA4	A	199	203	Right-handed 310
Helix 5	AA5	A	216	233	Right-handed alpha
Helix 6	AA6	A	259	267	Right-handed alpha
Helix 7	AA7	A	267	272	Right-handed alpha
Helix 8	AA8	A	275	299	Right-handed alpha
Helix 9	AA9	A	309	322	Right-handed alpha
Helix 10	AB1	A	334	347	Right-handed alpha
Helix 11	AB2	A	350	359	Right-handed alpha
Helix 12	AB3	A	401	405	Right-handed 310
Helix 13	AB4	A	409	413	Right-handed 310
Helix 14	AB5	A	432	437	Right-handed alpha
Helix 15	AB6	A	460	462	Right-handed 310
Helix 16	AB7	A	467	471	Right-handed 310
Helix 17	AB8	A	495	504	Right-handed alpha
Helix 18	AB9	A	549	556	Right-handed alpha
Helix 19	AC1	A	571	578	Right-handed alpha
Helix 20	AC2	A	587	596	Right-handed alpha
Helix 21	AC3	A	599	601	Right-handed 310
Helix 22	AC4	A	602	619	Right-handed alpha
Helix 23	AC5	A	636	642	Right-handed alpha
Helix 24	AC6	A	643	646	Right-handed 310
Helix 25	AC7	A	648	660	Right-handed alpha
Helix 26	AC8	A	661	665	Right-handed 310
Helix 27	AC9	A	687	721	Right-handed alpha
Helix 28	AD1	A	721	752	Right-handed alpha
Helix 29	AD2	A	757	762	Right-handed alpha
Helix 30	AD3	A	765	800	Right-handed alpha
Helix 31	AD4	A	800	826	Right-handed alpha
Helix 32	AD5	A	833	845	Right-handed alpha
Helix 33	AD6	A	852	856	Right-handed 310
Helix 34	AD7	A	859	866	Right-handed alpha
Helix 35	AD8	B	86	90	Right-handed 310
Helix 36	AD9	C	28	32	Right-handed 310
Helix 37	AE1	C	73	75	Right-handed 310
Helix 38	AE2	C	86	90	Right-handed 310
Helix 39	AE3	C	106	110	Right-handed alpha
Helix 40	AE4	D	34	38	Right-handed 310
Helix 41	AE5	D	90	94	Right-handed 310

There are 18 sheets in PDB entry 6UI1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	134	138	anti-parallel
Strand 3	A	19	23	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	42	48	anti-parallel
Strand 6	A	151	155	parallel
Strand 7	A	184	187	parallel
Strand 8	A	164	167	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	302	303	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	214	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	414	416	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	331	332	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	A	426	431	anti-parallel
Strand 3	A	542	545	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	481	first strand
Strand 2	A	679	681	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	569	first strand
Strand 2	A	581	583	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	627	first strand
Strand 2	A	630	633	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	112	113	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	91	97	anti-parallel
Strand 5	B	103	104	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	34	39	anti-parallel
Strand 4	B	91	97	anti-parallel
Strand 5	B	108	110	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	91	98	anti-parallel
Strand 4	C	113	114	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	104	105	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	71	76	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	111	115	parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	40	45	anti-parallel
Strand 5	D	52	57	anti-parallel
Strand 6	D	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UI1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UI1