Analysis of interatomic Contacts of Structural Units in PDB entry:
6UIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UIB entry

There are 3 chains in PDB entry 6UIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8LEU 168
B
 LEU 0CYS 305
C
 THR 4GLY 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6UIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
53 57Right-handed 310
Helix 3
AA3
A
59 86Right-handed alpha
Helix 4
AA4
A
100 117Right-handed alpha
Helix 5
AA5
A
137 168Right-handed alpha
Helix 6
AA6
B
59 63Right-handed 310
Helix 7
AA7
B
206 211Right-handed 310
Helix 8
AA8
C
6 9Right-handed 310
Helix 9
AA9
C
10 18Right-handed alpha
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There are 6 sheets in PDB entry 6UIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 5first strand
Strand 2
B
8 13anti-parallel
Strand 3
B
78 84parallel
Strand 4
B
64 67anti-parallel
Strand 5
B
39 40anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
52 57anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
117 124anti-parallel
Strand 3
B
165 173anti-parallel
Strand 4
B
152 156anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
117 124anti-parallel
Strand 3
B
165 173anti-parallel
Strand 4
B
144 148anti-parallel
Strand 5
B
130 138anti-parallel
Strand 6
B
186 194anti-parallel
Strand 7
B
197 205anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 223first strand
Strand 2
B
229 235anti-parallel
Strand 3
B
273 277anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
249 255anti-parallel
Strand 3
B
284 290anti-parallel
Strand 4
B
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il