Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UJ0 entry

There are 4 chains in PDB entry 6UJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 17	PRO 397
B	LEU 16	ALA 398
C	UNK 1	UNK 7
D	UNK 1	UNK 5

There are 21 helices in PDB entry 6UJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	139	143	Right-handed 310
Helix 3	AA3	A	151	161	Right-handed alpha
Helix 4	AA4	A	193	197	Right-handed 310
Helix 5	AA5	A	251	265	Right-handed alpha
Helix 6	AA6	A	271	276	Right-handed alpha
Helix 7	AA7	A	288	293	Right-handed 310
Helix 8	AA8	A	314	318	Right-handed alpha
Helix 9	AA9	A	346	351	Right-handed alpha
Helix 10	AB1	A	370	373	Right-handed 310
Helix 11	AB2	B	69	73	Right-handed 310
Helix 12	AB3	B	139	143	Right-handed 310
Helix 13	AB4	B	151	161	Right-handed alpha
Helix 14	AB5	B	193	197	Right-handed 310
Helix 15	AB6	B	229	235	Right-handed 310
Helix 16	AB7	B	251	265	Right-handed alpha
Helix 17	AB8	B	271	277	Right-handed alpha
Helix 18	AB9	B	288	293	Right-handed 310
Helix 19	AC1	B	314	318	Right-handed alpha
Helix 20	AC2	B	346	351	Right-handed alpha
Helix 21	AC3	B	370	373	Right-handed 310

There are 12 sheets in PDB entry 6UJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	22	first strand
Strand 2	A	185	189	anti-parallel
Strand 3	A	165	170	anti-parallel
Strand 4	A	353	358	anti-parallel
Strand 5	A	363	368	anti-parallel
Strand 6	A	198	208	anti-parallel
Strand 7	A	213	214	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	86	first strand
Strand 2	A	91	105	anti-parallel
Strand 3	A	108	122	anti-parallel
Strand 4	A	54	57	parallel
Strand 5	A	133	136	anti-parallel
Strand 6	A	41	48	parallel
Strand 7	A	31	36	anti-parallel
Strand 8	A	91	105	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	296	301	anti-parallel
Strand 4	A	307	313	anti-parallel
Strand 5	A	380	387	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	342	345	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	336	339	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	330	334	anti-parallel
Strand 3	A	279	283	anti-parallel
Strand 4	C	2	4	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	189	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	353	358	anti-parallel
Strand 5	B	363	368	anti-parallel
Strand 6	B	198	208	anti-parallel
Strand 7	B	213	214	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	86	first strand
Strand 2	B	91	102	anti-parallel
Strand 3	B	110	122	anti-parallel
Strand 4	B	54	57	parallel
Strand 5	B	133	136	anti-parallel
Strand 6	B	41	48	parallel
Strand 7	B	31	36	anti-parallel
Strand 8	B	91	102	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	296	301	anti-parallel
Strand 4	B	307	313	anti-parallel
Strand 5	B	380	387	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	343	345	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	250	first strand
Strand 2	B	336	339	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	321	first strand
Strand 2	B	329	334	anti-parallel
Strand 3	B	280	284	anti-parallel
Strand 4	D	3	4	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJ0