Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UJ1 entry

There are 2 chains in PDB entry 6UJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 16	PRO 397
B	PHE 15	VAL 396

There are 18 helices in PDB entry 6UJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	139	143	Right-handed 310
Helix 2	AA2	A	151	161	Right-handed alpha
Helix 3	AA3	A	193	197	Right-handed 310
Helix 4	AA4	A	229	235	Right-handed 310
Helix 5	AA5	A	251	265	Right-handed alpha
Helix 6	AA6	A	288	293	Right-handed 310
Helix 7	AA7	A	314	318	Right-handed alpha
Helix 8	AA8	A	346	351	Right-handed alpha
Helix 9	AA9	A	373	377	Right-handed 310
Helix 10	AB1	B	15	19	Right-handed 310
Helix 11	AB2	B	139	143	Right-handed 310
Helix 12	AB3	B	151	160	Right-handed alpha
Helix 13	AB4	B	229	234	Right-handed alpha
Helix 14	AB5	B	251	265	Right-handed alpha
Helix 15	AB6	B	288	293	Right-handed 310
Helix 16	AB7	B	314	318	Right-handed alpha
Helix 17	AB8	B	346	351	Right-handed alpha
Helix 18	AB9	B	370	373	Right-handed 310

There are 11 sheets in PDB entry 6UJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	29	36	anti-parallel
Strand 3	A	41	48	anti-parallel
Strand 4	A	133	136	parallel
Strand 5	A	55	57	anti-parallel
Strand 6	A	111	122	parallel
Strand 7	A	91	102	anti-parallel
Strand 8	A	77	86	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	29	36	anti-parallel
Strand 3	A	91	102	anti-parallel
Strand 4	A	77	86	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	165	170	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	363	368	anti-parallel
Strand 5	A	198	208	anti-parallel
Strand 6	A	213	214	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	296	301	anti-parallel
Strand 4	A	308	313	anti-parallel
Strand 5	A	380	383	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	343	345	parallel
Strand 3	A	247	250	anti-parallel
Strand 4	A	336	339	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	284	first strand
Strand 2	A	329	334	anti-parallel
Strand 3	A	319	320	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	86	first strand
Strand 2	B	91	102	anti-parallel
Strand 3	B	29	36	anti-parallel
Strand 4	B	22	25	anti-parallel
Strand 5	B	184	189	anti-parallel
Strand 6	B	165	170	anti-parallel
Strand 7	B	353	358	anti-parallel
Strand 8	B	363	368	anti-parallel
Strand 9	B	198	205	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	86	first strand
Strand 2	B	91	102	anti-parallel
Strand 3	B	111	122	anti-parallel
Strand 4	B	55	57	parallel
Strand 5	B	133	136	anti-parallel
Strand 6	B	41	48	parallel
Strand 7	B	29	36	anti-parallel
Strand 8	B	22	25	anti-parallel
Strand 9	B	184	189	anti-parallel
Strand 10	B	165	170	anti-parallel
Strand 11	B	353	358	anti-parallel
Strand 12	B	363	368	anti-parallel
Strand 13	B	198	205	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	296	301	anti-parallel
Strand 4	B	308	313	anti-parallel
Strand 5	B	380	383	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	343	345	parallel
Strand 3	B	247	250	anti-parallel
Strand 4	B	336	339	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	319	321	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJ1