Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UJ5 entry

There are 2 chains in PDB entry 6UJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 14SER 365
B
 GLN 14SER 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6UJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 75Right-handed alpha
Helix 2
AA2
A
78 80Right-handed 310
Helix 3
AA3
A
94 102Right-handed alpha
Helix 4
AA4
A
112 128Right-handed alpha
Helix 5
AA5
A
188 201Right-handed alpha
Helix 6
AA6
A
204 215Right-handed alpha
Helix 7
AA7
A
216 220Right-handed 310
Helix 8
AA8
A
224 229Right-handed alpha
Helix 9
AA9
A
284 310Right-handed alpha
Helix 10
AB1
A
325 341Right-handed alpha
Helix 11
AB2
A
351 353Right-handed 310
Helix 12
AB3
A
354 365Right-handed alpha
Helix 13
AB4
B
59 75Right-handed alpha
Helix 14
AB5
B
78 80Right-handed 310
Helix 15
AB6
B
89 94Right-handed alpha
Helix 16
AB7
B
94 102Right-handed alpha
Helix 17
AB8
B
112 128Right-handed alpha
Helix 18
AB9
B
188 201Right-handed alpha
Helix 19
AC1
B
204 215Right-handed alpha
Helix 20
AC2
B
216 220Right-handed 310
Helix 21
AC3
B
224 229Right-handed alpha
Helix 22
AC4
B
246 252Right-handed alpha
Helix 23
AC5
B
271 279Right-handed alpha
Helix 24
AC6
B
283 310Right-handed alpha
Helix 25
AC7
B
325 340Right-handed alpha
Helix 26
AC8
B
351 353Right-handed 310
Helix 27
AC9
B
354 369Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6UJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
27 33anti-parallel
Strand 5
A
82 87parallel
Strand 6
A
107 110parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
132 136anti-parallel
Strand 3
A
345 349anti-parallel
Strand 4
A
314 319parallel
Strand 5
A
159 164parallel
Strand 6
A
168 175anti-parallel
Strand 7
A
178 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
B
268 270anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
27 33anti-parallel
Strand 5
B
82 87parallel
Strand 6
B
107 110parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
132 136anti-parallel
Strand 3
B
345 349anti-parallel
Strand 4
B
314 319parallel
Strand 5
B
159 164parallel
Strand 6
B
168 175anti-parallel
Strand 7
B
178 185anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
242 244anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il