Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UJ6 entry

There is 1 chain in PDB entry 6UJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 22PRO 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6UJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 49Right-handed alpha
Helix 2
AA2
A
63 73Right-handed alpha
Helix 3
AA3
A
82 91Right-handed alpha
Helix 4
AA4
A
127 131Right-handed 310
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
156 158Right-handed 310
Helix 7
AA7
A
164 171Right-handed alpha
Helix 8
AA8
A
186 191Right-handed 310
Helix 9
AA9
A
205 216Right-handed alpha
Helix 10
AB1
A
227 233Right-handed alpha
Helix 11
AB2
A
235 240Right-handed alpha
Helix 12
AB3
A
253 260Right-handed 310
Helix 13
AB4
A
278 294Right-handed alpha
Helix 14
AB5
A
329 335Right-handed alpha
Helix 15
AB6
A
335 348Right-handed alpha
Helix 16
AB7
A
367 380Right-handed alpha
Helix 17
AB8
A
392 402Right-handed alpha
Helix 18
AB9
A
411 421Right-handed alpha
Helix 19
AC1
A
481 491Right-handed alpha
Helix 20
AC2
A
494 498Right-handed 310
Helix 21
AC3
A
511 515Right-handed 310
Helix 22
AC4
A
520 524Right-handed 310
Helix 23
AC5
A
534 546Right-handed alpha
Helix 24
AC6
A
555 560Right-handed alpha
Helix 25
AC7
A
567 572Right-handed alpha
Helix 26
AC8
A
574 576Right-handed 310
Helix 27
AC9
A
609 611Right-handed 310
Helix 28
AD1
A
612 628Right-handed alpha
Helix 29
AD2
A
665 671Right-handed alpha
Helix 30
AD3
A
671 682Right-handed alpha
Helix 31
AD4
A
683 685Right-handed 310
Helix 32
AD5
A
687 696Right-handed alpha
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There are 8 sheets in PDB entry 6UJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
55 60parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
269 273anti-parallel
Strand 3
A
96 103anti-parallel
Strand 4
A
320 323anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
135 138parallel
Strand 3
A
221 225parallel
Strand 4
A
113 121anti-parallel
Strand 5
A
242 245anti-parallel
Strand 6
A
251 252anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
135 138parallel
Strand 3
A
221 225parallel
Strand 4
A
113 121anti-parallel
Strand 5
A
263 266anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 365first strand
Strand 2
A
385 389parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 410first strand
Strand 2
A
605 608anti-parallel
Strand 3
A
424 430anti-parallel
Strand 4
A
656 659anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
468 469parallel
Strand 3
A
549 553parallel
Strand 4
A
446 452anti-parallel
Strand 5
A
578 581anti-parallel
Strand 6
A
587 589anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
468 469parallel
Strand 3
A
549 553parallel
Strand 4
A
446 452anti-parallel
Strand 5
A
599 600anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il