Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UJC entry

There are 4 chains in PDB entry 6UJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1LEU 593
B
 VAL 62CYS 425
E
 GLN 1SER 115
F
 ASP 1ALA 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6UJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 180Right-handed alpha
Helix 2
AA2
A
188 194Right-handed alpha
Helix 3
AA3
A
214 218Right-handed 310
Helix 4
AA4
A
245 250Right-handed alpha
Helix 5
AA5
A
366 370Right-handed 310
Helix 6
AA6
A
427 429Right-handed 310
Helix 7
AA7
B
114 116Right-handed 310
Helix 8
AA8
B
117 122Right-handed alpha
Helix 9
AA9
B
123 126Right-handed 310
Helix 10
AB1
B
127 135Right-handed alpha
Helix 11
AB2
B
161 168Right-handed alpha
Helix 12
AB3
B
191 201Right-handed alpha
Helix 13
AB4
B
213 224Right-handed alpha
Helix 14
AB5
B
224 229Right-handed alpha
Helix 15
AB6
B
248 256Right-handed 310
Helix 16
AB7
B
282 293Right-handed alpha
Helix 17
AB8
B
305 311Right-handed alpha
Helix 18
AB9
B
312 316Right-handed 310
Helix 19
AC1
B
330 343Right-handed alpha
Helix 20
AC2
B
374 376Right-handed 310
Helix 21
AC3
E
28 31Right-handed 310
Helix 22
AC4
E
74 76Right-handed 310
Helix 23
AC5
E
87 91Right-handed 310
Helix 24
AC6
F
89 93Right-handed 310
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There are 22 sheets in PDB entry 6UJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 12first strand
Strand 2
A
431 437anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
408 412anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
67 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
135 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 164first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
208 209anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
326 332anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
357 362anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
389 392anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 513first strand
Strand 2
A
534 542anti-parallel
Strand 3
A
472 482anti-parallel
Strand 4
A
440 450anti-parallel
Strand 5
A
577 578parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 455first strand
Strand 2
A
585 593parallel
Strand 3
A
554 563anti-parallel
Strand 4
A
490 499anti-parallel
Strand 5
A
520 528anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 462first strand
Strand 2
A
469 470anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
80 85anti-parallel
Strand 3
B
417 423parallel
Strand 4
B
405 410anti-parallel
Strand 5
B
348 352anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
90 97anti-parallel
Strand 3
B
386 394anti-parallel
Strand 4
B
357 364anti-parallel
Strand 5
B
370 372anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 189first strand
Strand 2
B
139 149anti-parallel
Strand 3
B
103 112parallel
Strand 4
B
235 242parallel
Strand 5
B
295 301parallel
Strand 6
B
320 323parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 6first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
110 114parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 52anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 12first strand
Strand 2
E
110 114parallel
Strand 3
E
92 98anti-parallel
Strand 4
E
105 106anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 7first strand
Strand 2
F
19 25anti-parallel
Strand 3
F
80 85anti-parallel
Strand 4
F
72 77anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
111 115parallel
Strand 3
F
95 100anti-parallel
Strand 4
F
43 48anti-parallel
Strand 5
F
55 59anti-parallel
Strand 6
F
63 64anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
10 13first strand
Strand 2
F
111 115parallel
Strand 3
F
95 100anti-parallel
Strand 4
F
106 107anti-parallel
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