Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UJD entry

There is 1 chain in PDB entry 6UJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6UJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 58Right-handed alpha
Helix 2
AA2
A
95 114Right-handed alpha
Helix 3
AA3
A
125 127Right-handed 310
Helix 4
AA4
A
128 142Right-handed alpha
Helix 5
AA5
A
155 162Right-handed alpha
Helix 6
AA6
A
220 234Right-handed alpha
Helix 7
AA7
A
245 247Right-handed 310
Helix 8
AA8
A
249 263Right-handed alpha
Helix 9
AA9
A
292 299Right-handed alpha
Helix 10
AB1
A
309 319Right-handed alpha
Helix 11
AB2
A
329 350Right-handed alpha
Helix 12
AB3
A
351 353Right-handed 310
Helix 13
AB4
A
362 375Right-handed alpha
Helix 14
AB5
A
379 399Right-handed alpha
Helix 15
AB6
A
405 422Right-handed alpha
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There are 4 sheets in PDB entry 6UJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
13 15anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
23 28parallel
Strand 3
A
237 243parallel
Strand 4
A
267 273parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
215 219anti-parallel
Strand 5
A
210 212anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
276 278anti-parallel
Strand 3
A
326 328parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il