Analysis of interatomic Contacts of Structural Units in PDB entry:
6UJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UJK entry

There are 2 chains in PDB entry 6UJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ARG 250
B
 THR 3ARG 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6UJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
59 74Right-handed alpha
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
111 127Right-handed alpha
Helix 6
AA6
A
144 149Right-handed alpha
Helix 7
AA7
A
153 175Right-handed alpha
Helix 8
AA8
A
191 195Right-handed 310
Helix 9
AA9
A
202 208Right-handed alpha
Helix 10
AB1
A
217 231Right-handed alpha
Helix 11
AB2
B
15 28Right-handed alpha
Helix 12
AB3
B
39 45Right-handed alpha
Helix 13
AB4
B
59 74Right-handed alpha
Helix 14
AB5
B
99 111Right-handed alpha
Helix 15
AB6
B
111 127Right-handed alpha
Helix 16
AB7
B
144 149Right-handed alpha
Helix 17
AB8
B
153 175Right-handed alpha
Helix 18
AB9
B
191 195Right-handed 310
Helix 19
AC1
B
202 208Right-handed alpha
Helix 20
AC2
B
217 231Right-handed alpha
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There are 4 sheets in PDB entry 6UJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
76 81parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
238 241parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
96 97anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
31 36parallel
Strand 3
B
7 11parallel
Strand 4
B
76 81parallel
Strand 5
B
136 141parallel
Strand 6
B
179 186parallel
Strand 7
B
238 241parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
96 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il