Analysis of interatomic Contacts of Structural Units in PDB entry:
6UK1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UK1 entry

There are 4 chains in PDB entry 6UK1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1202	LEU 1430
B	ASP 1202	LYS 1429
C	ASP 1202	LEU 1430
D	TRP 1204	LYS 1429

There are 40 helices in PDB entry 6UK1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1249	1258	Right-handed alpha
Helix 2	AA2	A	1278	1284	Right-handed alpha
Helix 3	AA3	A	1300	1305	Right-handed alpha
Helix 4	AA4	A	1311	1322	Right-handed alpha
Helix 5	AA5	A	1324	1330	Right-handed alpha
Helix 6	AA6	A	1333	1336	Right-handed 310
Helix 7	AA7	A	1347	1362	Right-handed alpha
Helix 8	AA8	A	1371	1376	Right-handed alpha
Helix 9	AA9	A	1377	1388	Right-handed alpha
Helix 10	AB1	A	1403	1407	Right-handed 310
Helix 11	AB2	B	1249	1258	Right-handed alpha
Helix 12	AB3	B	1278	1284	Right-handed alpha
Helix 13	AB4	B	1300	1305	Right-handed alpha
Helix 14	AB5	B	1311	1322	Right-handed alpha
Helix 15	AB6	B	1324	1331	Right-handed alpha
Helix 16	AB7	B	1333	1336	Right-handed 310
Helix 17	AB8	B	1347	1362	Right-handed alpha
Helix 18	AB9	B	1371	1376	Right-handed alpha
Helix 19	AC1	B	1377	1389	Right-handed alpha
Helix 20	AC2	B	1403	1407	Right-handed 310
Helix 21	AC3	C	1249	1258	Right-handed alpha
Helix 22	AC4	C	1278	1284	Right-handed alpha
Helix 23	AC5	C	1299	1305	Right-handed alpha
Helix 24	AC6	C	1311	1322	Right-handed alpha
Helix 25	AC7	C	1324	1329	Right-handed alpha
Helix 26	AC8	C	1333	1337	Right-handed 310
Helix 27	AC9	C	1340	1344	Right-handed 310
Helix 28	AD1	C	1347	1362	Right-handed alpha
Helix 29	AD2	C	1377	1388	Right-handed alpha
Helix 30	AD3	C	1403	1407	Right-handed 310
Helix 31	AD4	D	1249	1258	Right-handed alpha
Helix 32	AD5	D	1278	1284	Right-handed alpha
Helix 33	AD6	D	1300	1305	Right-handed alpha
Helix 34	AD7	D	1311	1322	Right-handed alpha
Helix 35	AD8	D	1324	1329	Right-handed alpha
Helix 36	AD9	D	1333	1336	Right-handed 310
Helix 37	AE1	D	1340	1344	Right-handed 310
Helix 38	AE2	D	1347	1362	Right-handed alpha
Helix 39	AE3	D	1377	1388	Right-handed alpha
Helix 40	AE4	D	1403	1407	Right-handed 310

There are 12 sheets in PDB entry 6UK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1234	first strand
Strand 2	A	1210	1218	anti-parallel
Strand 3	A	1262	1269	anti-parallel
Strand 4	A	1272	1273	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1286	1289	first strand
Strand 2	A	1366	1370	parallel
Strand 3	A	1396	1401	parallel
Strand 4	A	1239	1243	parallel
Strand 5	A	1412	1415	parallel
Strand 6	A	1422	1424	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1298	1299	first strand
Strand 2	A	1338	1339	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1227	1234	first strand
Strand 2	B	1210	1218	anti-parallel
Strand 3	B	1262	1264	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1227	1234	first strand
Strand 2	B	1210	1218	anti-parallel
Strand 3	B	1267	1269	anti-parallel
Strand 4	B	1272	1273	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1286	1289	first strand
Strand 2	B	1366	1370	parallel
Strand 3	B	1396	1401	parallel
Strand 4	B	1239	1243	parallel
Strand 5	B	1412	1417	parallel
Strand 6	B	1420	1424	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1298	1299	first strand
Strand 2	B	1338	1339	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1227	1234	first strand
Strand 2	C	1210	1218	anti-parallel
Strand 3	C	1262	1269	anti-parallel
Strand 4	C	1272	1273	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1286	1289	first strand
Strand 2	C	1366	1370	parallel
Strand 3	C	1396	1401	parallel
Strand 4	C	1239	1244	parallel
Strand 5	C	1412	1417	parallel
Strand 6	C	1420	1424	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1227	1234	first strand
Strand 2	D	1210	1218	anti-parallel
Strand 3	D	1262	1269	anti-parallel
Strand 4	D	1272	1273	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1286	1289	first strand
Strand 2	D	1366	1370	parallel
Strand 3	D	1396	1401	parallel
Strand 4	D	1239	1244	parallel
Strand 5	D	1412	1417	parallel
Strand 6	D	1420	1424	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1298	1299	first strand
Strand 2	D	1338	1339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UK1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UK1