Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UKI entry

There are 6 chains in PDB entry 6UKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1LEU 258
A
 C 1 A 14
B
 T 1 G 14
Y
 MET 1LEU 258
D
 C 1 A 14
E
 T 1 G 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6UKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
2 19Right-handed alpha
Helix 2
AA2
X
79 92Right-handed alpha
Helix 3
AA3
X
92 97Right-handed alpha
Helix 4
AA4
X
109 123Right-handed alpha
Helix 5
AA5
X
142 146Right-handed 310
Helix 6
AA6
X
168 180Right-handed alpha
Helix 7
AA7
X
241 257Right-handed alpha
Helix 8
AA8
Y
2 19Right-handed alpha
Helix 9
AA9
Y
79 92Right-handed alpha
Helix 10
AB1
Y
92 97Right-handed alpha
Helix 11
AB2
Y
109 124Right-handed alpha
Helix 12
AB3
Y
142 146Right-handed 310
Helix 13
AB4
Y
168 180Right-handed alpha
Helix 14
AB5
Y
241 256Right-handed alpha
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There are 8 sheets in PDB entry 6UKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
22 24first strand
Strand 2
X
35 37anti-parallel
Strand 3
X
43 47anti-parallel
Strand 4
X
126 132parallel
Strand 5
X
136 140anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
67 70first strand
Strand 2
X
51 62anti-parallel
Strand 3
X
228 236anti-parallel
Strand 4
X
148 156anti-parallel
Strand 5
X
104 105anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
162 163first strand
Strand 2
X
216 221anti-parallel
Strand 3
X
207 213anti-parallel
Strand 4
X
200 202anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
184 186first strand
Strand 2
X
189 191anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
22 24first strand
Strand 2
Y
35 37anti-parallel
Strand 3
Y
43 47anti-parallel
Strand 4
Y
126 132parallel
Strand 5
Y
136 140anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
67 70first strand
Strand 2
Y
51 62anti-parallel
Strand 3
Y
228 236anti-parallel
Strand 4
Y
148 156anti-parallel
Strand 5
Y
104 105anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
162 163first strand
Strand 2
Y
218 222anti-parallel
Strand 3
Y
207 211anti-parallel
Strand 4
Y
200 202anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
184 186first strand
Strand 2
Y
189 191anti-parallel
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