Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UKJ entry

There are 3 chains in PDB entry 6UKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 47ASN 405
H
 SER 3THR 129
L
 ASP 2GLU 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6UKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
59 83Right-handed alpha
Helix 3
AA3
A
89 112Right-handed alpha
Helix 4
AA4
A
126 148Right-handed alpha
Helix 5
AA5
A
152 174Right-handed alpha
Helix 6
AA6
A
180 205Right-handed alpha
Helix 7
AA7
A
210 237Right-handed alpha
Helix 8
AA8
A
241 259Right-handed alpha
Helix 9
AA9
A
260 264Right-handed 310
Helix 10
AB1
A
279 291Right-handed alpha
Helix 11
AB2
A
314 340Right-handed alpha
Helix 12
AB3
A
343 351Right-handed alpha
Helix 13
AB4
A
351 360Right-handed alpha
Helix 14
AB5
A
374 404Right-handed alpha
Helix 15
AB6
H
31 35Right-handed 310
Helix 16
AB7
H
90 94Right-handed 310
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There are 7 sheets in PDB entry 6UKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
6 8first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
71 76anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
48 50first strand
Strand 2
H
37 42anti-parallel
Strand 3
H
95 109anti-parallel
Strand 4
H
112 122anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
48 50first strand
Strand 2
H
37 42anti-parallel
Strand 3
H
95 109anti-parallel
Strand 4
H
126 128anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
52 55first strand
Strand 2
H
60 63anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 66anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 12first strand
Strand 2
L
104 105parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 91anti-parallel
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