Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UKO entry

There are 7 chains in PDB entry 6UKO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1029	ARG 1418
B	LEU 1029	ARG 1418
C	LEU 1029	ARG 1418
D	LEU 1029	ARG 1418
E	LEU 1029	ARG 1418
F	LEU 1029	ARG 1418
G	LEU 1029	ARG 1418

There are127 helices in PDB entry 6UKO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1029	1048	Right-handed alpha
Helix 2	AA2	A	1059	1072	Right-handed alpha
Helix 3	AA3	A	1144	1162	Right-handed alpha
Helix 4	AA4	A	1196	1210	Right-handed alpha
Helix 5	AA5	A	1212	1217	Right-handed alpha
Helix 6	AA6	A	1235	1247	Right-handed alpha
Helix 7	AA7	A	1262	1270	Right-handed alpha
Helix 8	AA8	A	1284	1287	Right-handed 310
Helix 9	AA9	A	1309	1311	Right-handed 310
Helix 10	AB1	A	1312	1317	Right-handed alpha
Helix 11	AB2	A	1333	1337	Right-handed 310
Helix 12	AB3	A	1338	1343	Right-handed 310
Helix 13	AB4	A	1357	1369	Right-handed alpha
Helix 14	AB5	A	1375	1388	Right-handed alpha
Helix 15	AB6	A	1392	1400	Right-handed alpha
Helix 16	AB7	A	1401	1403	Right-handed 310
Helix 17	AB8	A	1408	1413	Right-handed alpha
Helix 18	AB9	A	1414	1418	Right-handed 310
Helix 19	AC1	B	1030	1048	Right-handed alpha
Helix 20	AC2	B	1059	1072	Right-handed alpha
Helix 21	AC3	B	1144	1162	Right-handed alpha
Helix 22	AC4	B	1196	1210	Right-handed alpha
Helix 23	AC5	B	1212	1217	Right-handed alpha
Helix 24	AC6	B	1235	1247	Right-handed alpha
Helix 25	AC7	B	1262	1270	Right-handed alpha
Helix 26	AC8	B	1283	1287	Right-handed 310
Helix 27	AC9	B	1309	1311	Right-handed 310
Helix 28	AD1	B	1312	1317	Right-handed alpha
Helix 29	AD2	B	1333	1337	Right-handed 310
Helix 30	AD3	B	1338	1343	Right-handed 310
Helix 31	AD4	B	1357	1369	Right-handed alpha
Helix 32	AD5	B	1375	1388	Right-handed alpha
Helix 33	AD6	B	1392	1400	Right-handed alpha
Helix 34	AD7	B	1401	1403	Right-handed 310
Helix 35	AD8	B	1406	1412	Right-handed alpha
Helix 36	AD9	B	1413	1418	Right-handed 310
Helix 37	AE1	C	1030	1048	Right-handed alpha
Helix 38	AE2	C	1059	1072	Right-handed alpha
Helix 39	AE3	C	1144	1162	Right-handed alpha
Helix 40	AE4	C	1196	1210	Right-handed alpha
Helix 41	AE5	C	1212	1217	Right-handed alpha
Helix 42	AE6	C	1235	1247	Right-handed alpha
Helix 43	AE7	C	1262	1270	Right-handed alpha
Helix 44	AE8	C	1284	1287	Right-handed 310
Helix 45	AE9	C	1309	1311	Right-handed 310
Helix 46	AF1	C	1312	1317	Right-handed alpha
Helix 47	AF2	C	1333	1337	Right-handed 310
Helix 48	AF3	C	1338	1343	Right-handed 310
Helix 49	AF4	C	1357	1369	Right-handed alpha
Helix 50	AF5	C	1375	1388	Right-handed alpha
Helix 51	AF6	C	1392	1400	Right-handed alpha
Helix 52	AF7	C	1401	1403	Right-handed 310
Helix 53	AF8	C	1406	1412	Right-handed alpha
Helix 54	AF9	C	1414	1418	Right-handed 310
Helix 55	AG1	D	1030	1048	Right-handed alpha
Helix 56	AG2	D	1059	1072	Right-handed alpha
Helix 57	AG3	D	1144	1162	Right-handed alpha
Helix 58	AG4	D	1196	1210	Right-handed alpha
Helix 59	AG5	D	1215	1219	Right-handed 310
Helix 60	AG6	D	1235	1247	Right-handed alpha
Helix 61	AG7	D	1262	1270	Right-handed alpha
Helix 62	AG8	D	1283	1287	Right-handed 310
Helix 63	AG9	D	1309	1311	Right-handed 310
Helix 64	AH1	D	1312	1317	Right-handed alpha
Helix 65	AH2	D	1333	1337	Right-handed 310
Helix 66	AH3	D	1338	1343	Right-handed 310
Helix 67	AH4	D	1357	1369	Right-handed alpha
Helix 68	AH5	D	1373	1377	Right-handed 310
Helix 69	AH6	D	1378	1388	Right-handed alpha
Helix 70	AH7	D	1392	1400	Right-handed alpha
Helix 71	AH8	D	1401	1403	Right-handed 310
Helix 72	AH9	D	1406	1412	Right-handed alpha
Helix 73	AI1	D	1414	1418	Right-handed 310
Helix 74	AI2	E	1030	1048	Right-handed alpha
Helix 75	AI3	E	1059	1072	Right-handed alpha
Helix 76	AI4	E	1144	1162	Right-handed alpha
Helix 77	AI5	E	1196	1210	Right-handed alpha
Helix 78	AI6	E	1212	1217	Right-handed alpha
Helix 79	AI7	E	1235	1247	Right-handed alpha
Helix 80	AI8	E	1262	1272	Right-handed alpha
Helix 81	AI9	E	1284	1287	Right-handed 310
Helix 82	AJ1	E	1309	1311	Right-handed 310
Helix 83	AJ2	E	1312	1317	Right-handed alpha
Helix 84	AJ3	E	1333	1337	Right-handed 310
Helix 85	AJ4	E	1338	1343	Right-handed 310
Helix 86	AJ5	E	1357	1369	Right-handed alpha
Helix 87	AJ6	E	1375	1388	Right-handed alpha
Helix 88	AJ7	E	1392	1400	Right-handed alpha
Helix 89	AJ8	E	1401	1403	Right-handed 310
Helix 90	AJ9	E	1406	1412	Right-handed alpha
Helix 91	AK1	E	1413	1418	Right-handed 310
Helix 92	AK2	F	1030	1048	Right-handed alpha
Helix 93	AK3	F	1059	1072	Right-handed alpha
Helix 94	AK4	F	1144	1162	Right-handed alpha
Helix 95	AK5	F	1196	1210	Right-handed alpha
Helix 96	AK6	F	1212	1217	Right-handed alpha
Helix 97	AK7	F	1235	1247	Right-handed alpha
Helix 98	AK8	F	1262	1270	Right-handed alpha
Helix 99	AK9	F	1283	1287	Right-handed 310
Helix 100	AL1	F	1309	1311	Right-handed 310
Helix 101	AL2	F	1312	1317	Right-handed alpha
Helix 102	AL3	F	1333	1337	Right-handed 310
Helix 103	AL4	F	1338	1343	Right-handed 310
Helix 104	AL5	F	1357	1369	Right-handed alpha
Helix 105	AL6	F	1375	1388	Right-handed alpha
Helix 106	AL7	F	1392	1400	Right-handed alpha
Helix 107	AL8	F	1401	1403	Right-handed 310
Helix 108	AL9	F	1406	1412	Right-handed alpha
Helix 109	AM1	F	1413	1418	Right-handed 310
Helix 110	AM2	G	1030	1048	Right-handed alpha
Helix 111	AM3	G	1059	1072	Right-handed alpha
Helix 112	AM4	G	1144	1162	Right-handed alpha
Helix 113	AM5	G	1196	1210	Right-handed alpha
Helix 114	AM6	G	1212	1217	Right-handed alpha
Helix 115	AM7	G	1235	1247	Right-handed alpha
Helix 116	AM8	G	1262	1270	Right-handed alpha
Helix 117	AM9	G	1283	1287	Right-handed 310
Helix 118	AN1	G	1309	1311	Right-handed 310
Helix 119	AN2	G	1312	1317	Right-handed alpha
Helix 120	AN3	G	1333	1337	Right-handed 310
Helix 121	AN4	G	1338	1343	Right-handed 310
Helix 122	AN5	G	1357	1369	Right-handed alpha
Helix 123	AN6	G	1375	1388	Right-handed alpha
Helix 124	AN7	G	1392	1400	Right-handed alpha
Helix 125	AN8	G	1401	1403	Right-handed 310
Helix 126	AN9	G	1406	1412	Right-handed alpha
Helix 127	AO1	G	1414	1418	Right-handed 310

There are 26 sheets in PDB entry 6UKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1051	1052	first strand
Strand 2	A	1131	1138	anti-parallel
Strand 3	A	1113	1123	anti-parallel
Strand 4	A	1102	1106	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1091	1099	first strand
Strand 2	A	1076	1085	anti-parallel
Strand 3	B	1050	1054	parallel
Strand 4	B	1131	1139	anti-parallel
Strand 5	B	1113	1123	anti-parallel
Strand 6	B	1102	1106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1165	1166	first strand
Strand 2	A	1183	1184	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1178	first strand
Strand 2	A	1168	1172	anti-parallel
Strand 3	A	1250	1252	parallel
Strand 4	A	1277	1282	parallel
Strand 5	A	1325	1331	parallel
Strand 6	A	1223	1229	parallel
Strand 7	A	1350	1352	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1085	first strand
Strand 2	B	1091	1099	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1175	1178	first strand
Strand 2	B	1168	1172	anti-parallel
Strand 3	B	1250	1253	parallel
Strand 4	B	1277	1279	parallel
Strand 5	B	1325	1331	parallel
Strand 6	B	1223	1229	parallel
Strand 7	B	1350	1352	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1051	1052	first strand
Strand 2	C	1131	1138	anti-parallel
Strand 3	C	1113	1123	anti-parallel
Strand 4	C	1102	1106	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1091	1099	first strand
Strand 2	C	1076	1085	anti-parallel
Strand 3	D	1050	1052	parallel
Strand 4	D	1130	1139	anti-parallel
Strand 5	D	1113	1124	anti-parallel
Strand 6	D	1102	1106	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1165	1166	first strand
Strand 2	C	1183	1184	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1175	1178	first strand
Strand 2	C	1168	1172	anti-parallel
Strand 3	C	1250	1255	parallel
Strand 4	C	1277	1282	parallel
Strand 5	C	1325	1331	parallel
Strand 6	C	1223	1229	parallel
Strand 7	C	1350	1352	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1081	first strand
Strand 2	D	1095	1099	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1084	1085	first strand
Strand 2	D	1091	1092	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1175	1178	first strand
Strand 2	D	1168	1172	anti-parallel
Strand 3	D	1250	1255	parallel
Strand 4	D	1277	1282	parallel
Strand 5	D	1325	1331	parallel
Strand 6	D	1223	1229	parallel
Strand 7	D	1350	1352	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1051	1052	first strand
Strand 2	E	1130	1138	anti-parallel
Strand 3	E	1113	1124	anti-parallel
Strand 4	E	1102	1106	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1077	1081	first strand
Strand 2	E	1095	1099	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1084	1085	first strand
Strand 2	E	1091	1092	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1165	1166	first strand
Strand 2	E	1183	1184	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1175	1178	first strand
Strand 2	E	1168	1172	anti-parallel
Strand 3	E	1250	1254	parallel
Strand 4	E	1277	1282	parallel
Strand 5	E	1325	1331	parallel
Strand 6	E	1223	1229	parallel
Strand 7	E	1350	1352	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1077	1081	first strand
Strand 2	F	1095	1099	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1084	1085	first strand
Strand 2	F	1091	1092	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1102	1106	first strand
Strand 2	F	1113	1123	anti-parallel
Strand 3	F	1131	1138	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1165	1166	first strand
Strand 2	F	1183	1184	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1175	1178	first strand
Strand 2	F	1168	1172	anti-parallel
Strand 3	F	1250	1255	parallel
Strand 4	F	1277	1282	parallel
Strand 5	F	1325	1331	parallel
Strand 6	F	1223	1229	parallel
Strand 7	F	1350	1352	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1051	1052	first strand
Strand 2	G	1131	1138	anti-parallel
Strand 3	G	1113	1123	anti-parallel
Strand 4	G	1102	1106	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1077	1085	first strand
Strand 2	G	1091	1099	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1175	1178	first strand
Strand 2	G	1168	1172	anti-parallel
Strand 3	G	1250	1255	parallel
Strand 4	G	1277	1282	parallel
Strand 5	G	1325	1331	parallel
Strand 6	G	1223	1229	parallel
Strand 7	G	1350	1352	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UKO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKO