Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UKP entry

There are 7 chains in PDB entry 6UKP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 29	LEU 417
B	LEU 29	LEU 417
C	LEU 29	LEU 417
D	LEU 29	LEU 417
E	LEU 29	LEU 417
F	LEU 29	LEU 417
G	LEU 29	LEU 417

There are112 helices in PDB entry 6UKP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	47	Right-handed alpha
Helix 2	AA2	A	59	70	Right-handed alpha
Helix 3	AA3	A	86	90	Right-handed 310
Helix 4	AA4	A	144	160	Right-handed alpha
Helix 5	AA5	A	196	211	Right-handed alpha
Helix 6	AA6	A	212	217	Right-handed alpha
Helix 7	AA7	A	235	247	Right-handed alpha
Helix 8	AA8	A	262	272	Right-handed alpha
Helix 9	AA9	A	284	287	Right-handed 310
Helix 10	AB1	A	312	316	Right-handed alpha
Helix 11	AB2	A	333	337	Right-handed 310
Helix 12	AB3	A	357	369	Right-handed alpha
Helix 13	AB4	A	373	388	Right-handed alpha
Helix 14	AB5	A	392	401	Right-handed alpha
Helix 15	AB6	A	406	413	Right-handed alpha
Helix 16	AB7	A	414	417	Right-handed 310
Helix 17	AB8	B	30	47	Right-handed alpha
Helix 18	AB9	B	59	70	Right-handed alpha
Helix 19	AC1	B	86	90	Right-handed 310
Helix 20	AC2	B	144	160	Right-handed alpha
Helix 21	AC3	B	196	211	Right-handed alpha
Helix 22	AC4	B	212	217	Right-handed alpha
Helix 23	AC5	B	235	247	Right-handed alpha
Helix 24	AC6	B	262	272	Right-handed alpha
Helix 25	AC7	B	284	287	Right-handed 310
Helix 26	AC8	B	312	316	Right-handed alpha
Helix 27	AC9	B	333	337	Right-handed 310
Helix 28	AD1	B	357	369	Right-handed alpha
Helix 29	AD2	B	373	388	Right-handed alpha
Helix 30	AD3	B	392	401	Right-handed alpha
Helix 31	AD4	B	406	413	Right-handed alpha
Helix 32	AD5	B	414	417	Right-handed 310
Helix 33	AD6	C	30	47	Right-handed alpha
Helix 34	AD7	C	59	70	Right-handed alpha
Helix 35	AD8	C	86	90	Right-handed 310
Helix 36	AD9	C	144	160	Right-handed alpha
Helix 37	AE1	C	196	211	Right-handed alpha
Helix 38	AE2	C	212	217	Right-handed alpha
Helix 39	AE3	C	235	247	Right-handed alpha
Helix 40	AE4	C	262	272	Right-handed alpha
Helix 41	AE5	C	284	287	Right-handed 310
Helix 42	AE6	C	312	316	Right-handed alpha
Helix 43	AE7	C	333	337	Right-handed 310
Helix 44	AE8	C	357	369	Right-handed alpha
Helix 45	AE9	C	373	388	Right-handed alpha
Helix 46	AF1	C	392	401	Right-handed alpha
Helix 47	AF2	C	406	413	Right-handed alpha
Helix 48	AF3	C	414	417	Right-handed 310
Helix 49	AF4	D	30	47	Right-handed alpha
Helix 50	AF5	D	59	70	Right-handed alpha
Helix 51	AF6	D	86	90	Right-handed 310
Helix 52	AF7	D	144	160	Right-handed alpha
Helix 53	AF8	D	196	211	Right-handed alpha
Helix 54	AF9	D	212	217	Right-handed alpha
Helix 55	AG1	D	235	247	Right-handed alpha
Helix 56	AG2	D	262	272	Right-handed alpha
Helix 57	AG3	D	284	287	Right-handed 310
Helix 58	AG4	D	312	316	Right-handed alpha
Helix 59	AG5	D	333	337	Right-handed 310
Helix 60	AG6	D	357	369	Right-handed alpha
Helix 61	AG7	D	373	388	Right-handed alpha
Helix 62	AG8	D	392	401	Right-handed alpha
Helix 63	AG9	D	406	413	Right-handed alpha
Helix 64	AH1	D	414	417	Right-handed 310
Helix 65	AH2	E	30	47	Right-handed alpha
Helix 66	AH3	E	59	70	Right-handed alpha
Helix 67	AH4	E	86	90	Right-handed 310
Helix 68	AH5	E	144	160	Right-handed alpha
Helix 69	AH6	E	196	211	Right-handed alpha
Helix 70	AH7	E	212	217	Right-handed alpha
Helix 71	AH8	E	235	247	Right-handed alpha
Helix 72	AH9	E	262	272	Right-handed alpha
Helix 73	AI1	E	284	287	Right-handed 310
Helix 74	AI2	E	312	316	Right-handed alpha
Helix 75	AI3	E	333	337	Right-handed 310
Helix 76	AI4	E	357	369	Right-handed alpha
Helix 77	AI5	E	373	388	Right-handed alpha
Helix 78	AI6	E	392	401	Right-handed alpha
Helix 79	AI7	E	406	413	Right-handed alpha
Helix 80	AI8	E	414	417	Right-handed 310
Helix 81	AI9	F	30	47	Right-handed alpha
Helix 82	AJ1	F	59	70	Right-handed alpha
Helix 83	AJ2	F	86	90	Right-handed 310
Helix 84	AJ3	F	144	160	Right-handed alpha
Helix 85	AJ4	F	196	211	Right-handed alpha
Helix 86	AJ5	F	212	217	Right-handed alpha
Helix 87	AJ6	F	235	247	Right-handed alpha
Helix 88	AJ7	F	262	272	Right-handed alpha
Helix 89	AJ8	F	284	287	Right-handed 310
Helix 90	AJ9	F	312	316	Right-handed alpha
Helix 91	AK1	F	333	337	Right-handed 310
Helix 92	AK2	F	357	369	Right-handed alpha
Helix 93	AK3	F	373	388	Right-handed alpha
Helix 94	AK4	F	392	401	Right-handed alpha
Helix 95	AK5	F	406	413	Right-handed alpha
Helix 96	AK6	F	414	417	Right-handed 310
Helix 97	AK7	G	30	47	Right-handed alpha
Helix 98	AK8	G	59	70	Right-handed alpha
Helix 99	AK9	G	86	90	Right-handed 310
Helix 100	AL1	G	144	160	Right-handed alpha
Helix 101	AL2	G	196	211	Right-handed alpha
Helix 102	AL3	G	212	217	Right-handed alpha
Helix 103	AL4	G	235	247	Right-handed alpha
Helix 104	AL5	G	262	272	Right-handed alpha
Helix 105	AL6	G	284	287	Right-handed 310
Helix 106	AL7	G	312	316	Right-handed alpha
Helix 107	AL8	G	333	337	Right-handed 310
Helix 108	AL9	G	357	369	Right-handed alpha
Helix 109	AM1	G	373	388	Right-handed alpha
Helix 110	AM2	G	392	401	Right-handed alpha
Helix 111	AM3	G	406	413	Right-handed alpha
Helix 112	AM4	G	414	417	Right-handed 310

There are 21 sheets in PDB entry 6UKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	112	118	anti-parallel
Strand 3	A	134	139	anti-parallel
Strand 4	A	50	53	anti-parallel
Strand 5	G	77	82	parallel
Strand 6	G	94	99	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	B	50	53	parallel
Strand 4	B	134	139	anti-parallel
Strand 5	B	112	118	anti-parallel
Strand 6	B	102	107	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	168	172	anti-parallel
Strand 3	A	250	255	parallel
Strand 4	A	277	282	parallel
Strand 5	A	326	330	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	349	352	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	99	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	C	50	53	parallel
Strand 4	C	134	139	anti-parallel
Strand 5	C	112	118	anti-parallel
Strand 6	C	102	107	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	168	172	anti-parallel
Strand 3	B	250	255	parallel
Strand 4	B	277	282	parallel
Strand 5	B	326	330	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	349	352	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	99	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	D	50	53	parallel
Strand 4	D	134	139	anti-parallel
Strand 5	D	112	118	anti-parallel
Strand 6	D	102	107	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	250	255	parallel
Strand 4	C	277	282	parallel
Strand 5	C	326	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	349	352	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	99	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	E	50	53	parallel
Strand 4	E	134	139	anti-parallel
Strand 5	E	112	118	anti-parallel
Strand 6	E	102	107	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	168	172	anti-parallel
Strand 3	D	250	255	parallel
Strand 4	D	277	282	parallel
Strand 5	D	326	330	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	229	first strand
Strand 2	D	349	352	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	99	first strand
Strand 2	E	77	82	anti-parallel
Strand 3	F	50	53	parallel
Strand 4	F	134	139	anti-parallel
Strand 5	F	112	118	anti-parallel
Strand 6	F	102	107	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	168	172	anti-parallel
Strand 3	E	250	255	parallel
Strand 4	E	277	282	parallel
Strand 5	E	326	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	229	first strand
Strand 2	E	349	352	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	99	first strand
Strand 2	F	77	82	anti-parallel
Strand 3	G	50	53	parallel
Strand 4	G	134	139	anti-parallel
Strand 5	G	112	118	anti-parallel
Strand 6	G	102	107	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	177	first strand
Strand 2	F	168	172	anti-parallel
Strand 3	F	250	255	parallel
Strand 4	F	277	282	parallel
Strand 5	F	326	330	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	229	first strand
Strand 2	F	349	352	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	177	first strand
Strand 2	G	168	172	anti-parallel
Strand 3	G	250	255	parallel
Strand 4	G	277	282	parallel
Strand 5	G	326	330	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	229	first strand
Strand 2	G	349	352	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UKP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKP