Analysis of interatomic Contacts of Structural Units in PDB entry:
6UKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UKT entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6UKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2TYR 434
A
 GLU 436ASP 439
A
 ASP 441ASN 484
B
 LEU 37PHE 354
C
 GLY 10GLN 109
D
 GLN 3THR 121
E
 GLN 3VAL 117
F
 VAL 2VAL 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6UKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
62 76Right-handed alpha
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
85 97Right-handed alpha
Helix 7
AA7
A
99 103Right-handed 310
Helix 8
AA8
A
110 128Right-handed alpha
Helix 9
AA9
A
128 139Right-handed alpha
Helix 10
AB1
A
140 150Right-handed alpha
Helix 11
AB2
A
157 175Right-handed alpha
Helix 12
AB3
A
175 187Right-handed alpha
Helix 13
AB4
A
187 201Right-handed alpha
Helix 14
AB5
A
213 231Right-handed alpha
Helix 15
AB6
A
240 259Right-handed alpha
Helix 16
AB7
A
266 280Right-handed alpha
Helix 17
AB8
A
282 290Right-handed 310
Helix 18
AB9
A
306 320Right-handed alpha
Helix 19
AC1
A
325 330Right-handed alpha
Helix 20
AC2
A
330 343Right-handed alpha
Helix 21
AC3
A
344 355Right-handed alpha
Helix 22
AC4
A
371 381Right-handed alpha
Helix 23
AC5
A
384 399Right-handed alpha
Helix 24
AC6
A
402 408Right-handed alpha
Helix 25
AC7
A
412 418Right-handed alpha
Helix 26
AC8
A
446 451Right-handed 310
Helix 27
AC9
A
476 481Right-handed 310
Helix 28
AD1
B
45 50Right-handed 310
Helix 29
AD2
B
83 90Right-handed alpha
Helix 30
AD3
B
99 102Right-handed 310
Helix 31
AD4
B
103 108Right-handed alpha
Helix 32
AD5
B
122 133Right-handed alpha
Helix 33
AD6
B
133 143Right-handed alpha
Helix 34
AD7
B
151 161Right-handed alpha
Helix 35
AD8
B
211 215Right-handed 310
Helix 36
AD9
B
241 255Right-handed alpha
Helix 37
AE1
B
270 278Right-handed alpha
Helix 38
AE2
B
295 310Right-handed alpha
Helix 39
AE3
B
330 334Right-handed 310
Helix 40
AE4
B
338 350Right-handed alpha
Helix 41
AE5
D
53 56Right-handed 310
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There are 10 sheets in PDB entry 6UKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
261 262parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
220 224parallel
Strand 3
B
263 266parallel
Strand 4
B
320 321parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
196 197anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 97anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 70first strand
Strand 2
C
79 80anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 22first strand
Strand 2
D
79 83anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
45 51anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
93 98anti-parallel
Strand 5
D
118 119anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 46first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
92 96anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 7first strand
Strand 2
F
20 23anti-parallel
Strand 3
F
77 80anti-parallel
Strand 4
F
71 72anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
34 36first strand
Strand 2
F
95 97anti-parallel
Strand 3
F
113 114anti-parallel
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