Analysis of interatomic Contacts of Structural Units in PDB entry:
6UL4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UL4 entry

There are 2 chains in PDB entry 6UL4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 861GLU 1291
B
 VAL 2SER 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 6UL4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
941 948Right-handed alpha
Helix 2
AA2
A
1067 1080Right-handed alpha
Helix 3
AA3
A
1262 1267Right-handed alpha
Helix 4
AA4
B
109 113Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6UL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 877first strand
Strand 2
A
864 870anti-parallel
Strand 3
A
1054 1062anti-parallel
Strand 4
A
898 901anti-parallel
Strand 5
A
892 893anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 877first strand
Strand 2
A
864 870anti-parallel
Strand 3
A
1054 1062anti-parallel
Strand 4
A
926 933anti-parallel
Strand 5
A
1003 1009anti-parallel
Strand 6
A
1013 1018anti-parallel
Strand 7
A
1021 1027anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
884 887first strand
Strand 2
A
908 912anti-parallel
Strand 3
A
1039 1046anti-parallel
Strand 4
A
949 957anti-parallel
Strand 5
A
960 967anti-parallel
Strand 6
A
970 976anti-parallel
Strand 7
A
982 988anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1194 1197first strand
Strand 2
A
1176 1183anti-parallel
Strand 3
A
1204 1205anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1176 1183first strand
Strand 2
A
1166 1173anti-parallel
Strand 3
A
1208 1211anti-parallel
Strand 4
A
1221 1226anti-parallel
Strand 5
A
1234 1244anti-parallel
Strand 6
A
1253 1260anti-parallel
Strand 7
A
1190 1192anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1166 1173first strand
Strand 2
A
1144 1149anti-parallel
Strand 3
A
1097 1102anti-parallel
Strand 4
A
1279 1283anti-parallel
Strand 5
A
1221 1226anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1108 1112first strand
Strand 2
A
1119 1123anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
120 124parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
69 73anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il