Analysis of interatomic Contacts of Structural Units in PDB entry:
6ULD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ULD entry

There are 2 chains in PDB entry 6ULD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20ARG 447
B
 GLY 20ARG 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6ULD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
30 47Right-handed alpha
Helix 3
AA3
A
58 66Right-handed alpha
Helix 4
AA4
A
67 72Right-handed 310
Helix 5
AA5
A
86 105Right-handed alpha
Helix 6
AA6
A
115 128Right-handed alpha
Helix 7
AA7
A
139 142Right-handed 310
Helix 8
AA8
A
144 148Right-handed 310
Helix 9
AA9
A
152 157Right-handed alpha
Helix 10
AB1
A
173 185Right-handed alpha
Helix 11
AB2
A
201 213Right-handed alpha
Helix 12
AB3
A
223 229Right-handed alpha
Helix 13
AB4
A
264 273Right-handed alpha
Helix 14
AB5
A
281 295Right-handed alpha
Helix 15
AB6
A
297 319Right-handed alpha
Helix 16
AB7
A
320 325Right-handed alpha
Helix 17
AB8
A
332 334Right-handed 310
Helix 18
AB9
A
350 361Right-handed alpha
Helix 19
AC1
A
387 394Right-handed alpha
Helix 20
AC2
A
396 414Right-handed alpha
Helix 21
AC3
A
415 417Right-handed 310
Helix 22
AC4
A
418 433Right-handed alpha
Helix 23
AC5
A
438 442Right-handed 310
Helix 24
AC6
B
25 30Right-handed alpha
Helix 25
AC7
B
30 47Right-handed alpha
Helix 26
AC8
B
58 66Right-handed alpha
Helix 27
AC9
B
67 72Right-handed 310
Helix 28
AD1
B
86 105Right-handed alpha
Helix 29
AD2
B
115 128Right-handed alpha
Helix 30
AD3
B
139 142Right-handed 310
Helix 31
AD4
B
144 148Right-handed 310
Helix 32
AD5
B
152 157Right-handed alpha
Helix 33
AD6
B
173 185Right-handed alpha
Helix 34
AD7
B
201 213Right-handed alpha
Helix 35
AD8
B
223 229Right-handed alpha
Helix 36
AD9
B
247 251Right-handed 310
Helix 37
AE1
B
264 273Right-handed alpha
Helix 38
AE2
B
281 295Right-handed alpha
Helix 39
AE3
B
297 319Right-handed alpha
Helix 40
AE4
B
320 325Right-handed alpha
Helix 41
AE5
B
332 334Right-handed 310
Helix 42
AE6
B
350 362Right-handed alpha
Helix 43
AE7
B
387 394Right-handed alpha
Helix 44
AE8
B
396 414Right-handed alpha
Helix 45
AE9
B
418 433Right-handed alpha
Helix 46
AF1
B
438 442Right-handed 310
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There are 8 sheets in PDB entry 6ULD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
363 364parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
80 81anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
256 260anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
215 219parallel
Strand 5
A
188 192parallel
Strand 6
A
133 137parallel
Strand 7
A
159 163parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
339 343anti-parallel
Strand 3
A
382 386anti-parallel
Strand 4
A
366 367anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
363 364parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
80 81anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
256 260anti-parallel
Strand 3
B
241 245anti-parallel
Strand 4
B
215 219parallel
Strand 5
B
188 192parallel
Strand 6
B
133 137parallel
Strand 7
B
159 163parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
339 343anti-parallel
Strand 3
B
382 386anti-parallel
Strand 4
B
366 367anti-parallel
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