Analysis of interatomic Contacts of Structural Units in PDB entry:
6ULY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ULY entry

There are 2 chains in PDB entry 6ULY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 83	GLU 653
B	PRO 83	GLN 625

There are 46 helices in PDB entry 6ULY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	109	Right-handed alpha
Helix 2	AA2	A	128	145	Right-handed alpha
Helix 3	AA3	A	159	174	Right-handed alpha
Helix 4	AA4	A	190	203	Right-handed alpha
Helix 5	AA5	A	211	220	Right-handed alpha
Helix 6	AA6	A	220	225	Right-handed alpha
Helix 7	AA7	A	236	241	Right-handed 310
Helix 8	AA8	A	275	290	Right-handed alpha
Helix 9	AA9	A	305	310	Right-handed alpha
Helix 10	AB1	A	312	320	Right-handed alpha
Helix 11	AB2	A	327	334	Right-handed alpha
Helix 12	AB3	A	336	345	Right-handed alpha
Helix 13	AB4	A	353	362	Right-handed alpha
Helix 14	AB5	A	363	368	Right-handed alpha
Helix 15	AB6	A	388	400	Right-handed alpha
Helix 16	AB7	A	401	403	Right-handed 310
Helix 17	AB8	A	416	419	Right-handed 310
Helix 18	AB9	A	443	447	Right-handed 310
Helix 19	AC1	A	506	514	Right-handed alpha
Helix 20	AC2	A	552	560	Right-handed alpha
Helix 21	AC3	A	595	615	Right-handed alpha
Helix 22	AC4	A	617	619	Right-handed 310
Helix 23	AC5	A	641	653	Right-handed alpha
Helix 24	AC6	B	99	110	Right-handed alpha
Helix 25	AC7	B	128	145	Right-handed alpha
Helix 26	AC8	B	159	174	Right-handed alpha
Helix 27	AC9	B	190	203	Right-handed alpha
Helix 28	AD1	B	214	220	Right-handed alpha
Helix 29	AD2	B	220	226	Right-handed alpha
Helix 30	AD3	B	236	241	Right-handed 310
Helix 31	AD4	B	275	290	Right-handed alpha
Helix 32	AD5	B	305	310	Right-handed alpha
Helix 33	AD6	B	312	320	Right-handed alpha
Helix 34	AD7	B	327	334	Right-handed alpha
Helix 35	AD8	B	336	346	Right-handed alpha
Helix 36	AD9	B	353	363	Right-handed alpha
Helix 37	AE1	B	363	369	Right-handed alpha
Helix 38	AE2	B	388	400	Right-handed alpha
Helix 39	AE3	B	401	403	Right-handed 310
Helix 40	AE4	B	416	419	Right-handed 310
Helix 41	AE5	B	506	514	Right-handed alpha
Helix 42	AE6	B	515	519	Right-handed 310
Helix 43	AE7	B	540	542	Right-handed 310
Helix 44	AE8	B	551	561	Right-handed alpha
Helix 45	AE9	B	595	615	Right-handed alpha
Helix 46	AF1	B	617	621	Right-handed 310

There are 11 sheets in PDB entry 6ULY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	473	477	anti-parallel
Strand 3	A	490	495	anti-parallel
Strand 4	A	520	529	anti-parallel
Strand 5	A	532	538	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	127	first strand
Strand 2	A	113	117	anti-parallel
Strand 3	A	322	325	parallel
Strand 4	A	296	299	parallel
Strand 5	A	349	352	parallel
Strand 6	A	379	383	parallel
Strand 7	A	409	415	parallel
Strand 8	A	420	424	anti-parallel
Strand 9	A	467	468	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	234	first strand
Strand 2	A	207	210	parallel
Strand 3	A	152	156	parallel
Strand 4	A	176	179	parallel
Strand 5	A	255	260	parallel
Strand 6	A	270	274	anti-parallel
Strand 7	A	502	503	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	441	first strand
Strand 2	A	459	463	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	573	first strand
Strand 2	A	584	591	anti-parallel
Strand 3	A	621	625	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	473	477	anti-parallel
Strand 3	B	490	495	anti-parallel
Strand 4	B	520	529	anti-parallel
Strand 5	B	532	538	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	113	119	anti-parallel
Strand 3	B	322	325	parallel
Strand 4	B	296	299	parallel
Strand 5	B	349	352	parallel
Strand 6	B	379	383	parallel
Strand 7	B	409	415	parallel
Strand 8	B	420	424	anti-parallel
Strand 9	B	467	468	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	208	210	parallel
Strand 3	B	152	156	parallel
Strand 4	B	176	179	parallel
Strand 5	B	255	260	parallel
Strand 6	B	270	274	anti-parallel
Strand 7	B	502	503	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	459	463	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	548	550	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	571	first strand
Strand 2	B	586	591	anti-parallel
Strand 3	B	622	624	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ULY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ULY