Analysis of interatomic Contacts of Structural Units in PDB entry:
6UM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UM2 entry

There are 2 chains in PDB entry 6UM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 481	CYS 2134
B	SER 5	PRO 63

There are 12 helices in PDB entry 6UM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	649	653	Right-handed 310
Helix 2	AA2	A	764	768	Right-handed 310
Helix 3	AA3	A	934	938	Right-handed 310
Helix 4	AA4	A	956	959	Right-handed 310
Helix 5	AA5	A	1223	1226	Right-handed 310
Helix 6	AA6	A	1825	1830	Right-handed 310
Helix 7	AA7	A	1877	1881	Right-handed 310
Helix 8	AA8	A	2131	2134	Right-handed 310
Helix 9	AA9	B	12	21	Right-handed alpha
Helix 10	AB1	B	22	25	Right-handed 310
Helix 11	AB2	B	42	47	Right-handed alpha
Helix 12	AB3	B	54	59	Right-handed alpha

There are 34 sheets in PDB entry 6UM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	487	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	548	549	first strand
Strand 2	A	554	555	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	A	571	574	anti-parallel
Strand 3	A	590	595	anti-parallel
Strand 4	A	617	622	parallel
Strand 5	A	605	608	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	632	first strand
Strand 2	A	707	708	anti-parallel
Strand 3	A	713	716	anti-parallel
Strand 4	A	732	737	anti-parallel
Strand 5	A	757	762	parallel
Strand 6	A	748	753	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	669	first strand
Strand 2	A	685	690	anti-parallel
Strand 3	A	696	701	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	815	819	anti-parallel
Strand 3	A	837	840	anti-parallel
Strand 4	A	854	858	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	864	865	first strand
Strand 2	A	875	876	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	883	first strand
Strand 2	A	891	892	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	898	899	first strand
Strand 2	A	920	924	parallel
Strand 3	A	911	915	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	943	946	first strand
Strand 2	A	951	954	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	964	965	first strand
Strand 2	A	974	975	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1019	1021	first strand
Strand 2	A	1027	1029	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1115	1117	first strand
Strand 2	A	1128	1131	anti-parallel
Strand 3	A	1151	1153	anti-parallel
Strand 4	A	1158	1160	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1180	first strand
Strand 2	A	1193	1199	anti-parallel
Strand 3	A	1215	1222	parallel
Strand 4	A	1207	1212	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1230	1232	first strand
Strand 2	A	1312	1314	anti-parallel
Strand 3	A	1317	1322	anti-parallel
Strand 4	A	1336	1342	anti-parallel
Strand 5	A	1360	1366	parallel
Strand 6	A	1346	1352	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1257	1259	first strand
Strand 2	A	1265	1268	anti-parallel
Strand 3	A	1290	1293	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1411	1414	first strand
Strand 2	A	1435	1438	anti-parallel
Strand 3	A	1444	1445	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1462	1464	first strand
Strand 2	A	1478	1484	anti-parallel
Strand 3	A	1504	1510	parallel
Strand 4	A	1495	1496	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1526	1528	first strand
Strand 2	A	1535	1537	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1548	1550	first strand
Strand 2	A	1556	1559	anti-parallel
Strand 3	A	1574	1575	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1584	1585	first strand
Strand 2	A	1597	1603	anti-parallel
Strand 3	A	1591	1592	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1584	1585	first strand
Strand 2	A	1597	1603	anti-parallel
Strand 3	A	1616	1621	anti-parallel
Strand 4	A	1644	1647	parallel
Strand 5	A	1638	1639	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1664	1665	first strand
Strand 2	A	1668	1669	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1682	1684	first strand
Strand 2	A	1699	1701	anti-parallel
Strand 3	A	1721	1723	anti-parallel
Strand 4	A	1731	1736	anti-parallel
Strand 5	A	1751	1754	anti-parallel
Strand 6	A	1768	1771	anti-parallel
Strand 7	A	1793	1800	parallel
Strand 8	A	1774	1775	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1682	1684	first strand
Strand 2	A	1699	1701	anti-parallel
Strand 3	A	1721	1723	anti-parallel
Strand 4	A	1731	1736	anti-parallel
Strand 5	A	1751	1754	anti-parallel
Strand 6	A	1768	1771	anti-parallel
Strand 7	A	1793	1800	parallel
Strand 8	A	1784	1789	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1837	1838	first strand
Strand 2	A	1841	1842	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1844	1845	first strand
Strand 2	A	1864	1865	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1882	1886	first strand
Strand 2	A	1891	1896	anti-parallel
Strand 3	A	1959	1963	anti-parallel
Strand 4	A	1985	1988	parallel
Strand 5	A	1977	1981	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1916	1918	first strand
Strand 2	A	1921	1923	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1935	1937	first strand
Strand 2	A	1948	1950	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2025	2028	first strand
Strand 2	A	2031	2034	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2054	2056	first strand
Strand 2	A	2064	2066	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2074	2076	first strand
Strand 2	A	2081	2083	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2098	2105	first strand
Strand 2	A	2123	2130	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UM2