Analysis of interatomic Contacts of Structural Units in PDB entry:
6UM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UM6 entry

There are 12 chains in PDB entry 6UM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 32	VAL 505
B	ALA 512	ASP 664
C	GLN 1	SER 126
D	ALA 3	LEU 110
E	GLU 32	VAL 505
F	ALA 512	ASP 664
G	GLN 1	SER 126
H	ALA 3	LEU 110
I	GLU 32	VAL 505
J	ALA 512	ASP 664
K	GLN 1	SER 126
L	ALA 3	LEU 110

There are 63 helices in PDB entry 6UM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	68	Right-handed 310
Helix 2	AA2	A	96	98	Right-handed 310
Helix 3	AA3	A	99	116	Right-handed alpha
Helix 4	AA4	A	122	126	Right-handed 310
Helix 5	AA5	A	138	151	Right-handed alpha
Helix 6	AA6	A	195	198	Right-handed 310
Helix 7	AA7	A	335	350	Right-handed alpha
Helix 8	AA8	A	368	373	Right-handed alpha
Helix 9	AA9	A	377	381	Right-handed 310
Helix 10	AB1	A	474	484	Right-handed alpha
Helix 11	AB2	B	513	520	Right-handed alpha
Helix 12	AB3	B	523	536	Right-handed 310
Helix 13	AB4	B	538	543	Right-handed alpha
Helix 14	AB5	B	570	597	Right-handed alpha
Helix 15	AB6	B	611	615	Right-handed 310
Helix 16	AB7	B	618	625	Right-handed alpha
Helix 17	AB8	B	627	635	Right-handed alpha
Helix 18	AB9	B	638	664	Right-handed alpha
Helix 19	AC1	C	62	65	Right-handed 310
Helix 20	AC2	C	87	91	Right-handed 310
Helix 21	AC3	D	81	85	Right-handed 310
Helix 22	AC4	E	62	68	Right-handed 310
Helix 23	AC5	E	96	98	Right-handed 310
Helix 24	AC6	E	99	116	Right-handed alpha
Helix 25	AC7	E	122	126	Right-handed 310
Helix 26	AC8	E	138	151	Right-handed alpha
Helix 27	AC9	E	195	198	Right-handed 310
Helix 28	AD1	E	335	350	Right-handed alpha
Helix 29	AD2	E	368	373	Right-handed alpha
Helix 30	AD3	E	377	381	Right-handed 310
Helix 31	AD4	E	474	484	Right-handed alpha
Helix 32	AD5	F	513	520	Right-handed alpha
Helix 33	AD6	F	523	536	Right-handed 310
Helix 34	AD7	F	538	543	Right-handed alpha
Helix 35	AD8	F	570	597	Right-handed alpha
Helix 36	AD9	F	611	615	Right-handed 310
Helix 37	AE1	F	618	625	Right-handed alpha
Helix 38	AE2	F	627	635	Right-handed alpha
Helix 39	AE3	F	638	664	Right-handed alpha
Helix 40	AE4	G	62	65	Right-handed 310
Helix 41	AE5	G	87	91	Right-handed 310
Helix 42	AE6	H	81	85	Right-handed 310
Helix 43	AE7	I	62	68	Right-handed 310
Helix 44	AE8	I	96	98	Right-handed 310
Helix 45	AE9	I	99	116	Right-handed alpha
Helix 46	AF1	I	122	126	Right-handed 310
Helix 47	AF2	I	138	151	Right-handed alpha
Helix 48	AF3	I	195	198	Right-handed 310
Helix 49	AF4	I	335	350	Right-handed alpha
Helix 50	AF5	I	368	373	Right-handed alpha
Helix 51	AF6	I	377	381	Right-handed 310
Helix 52	AF7	I	474	484	Right-handed alpha
Helix 53	AF8	J	513	520	Right-handed alpha
Helix 54	AF9	J	523	536	Right-handed 310
Helix 55	AG1	J	538	543	Right-handed alpha
Helix 56	AG2	J	570	597	Right-handed alpha
Helix 57	AG3	J	611	615	Right-handed 310
Helix 58	AG4	J	618	625	Right-handed alpha
Helix 59	AG5	J	627	635	Right-handed alpha
Helix 60	AG6	J	638	664	Right-handed alpha
Helix 61	AG7	K	62	65	Right-handed 310
Helix 62	AG8	K	87	91	Right-handed 310
Helix 63	AG9	L	81	85	Right-handed 310

There are 42 sheets in PDB entry 6UM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	498	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	174	first strand
Strand 2	A	153	160	anti-parallel
Strand 3	A	129	132	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	179	181	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	443	457	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	383	385	anti-parallel
Strand 7	A	374	376	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	457	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	357	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	316	320	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	426	first strand
Strand 2	A	429	435	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	121	125	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	35	40	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	87	93	anti-parallel
Strand 4	D	99	101	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	23	first strand
Strand 2	D	72	79	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	498	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	174	first strand
Strand 2	E	153	160	anti-parallel
Strand 3	E	129	132	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	179	181	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	443	457	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	329	334	anti-parallel
Strand 5	E	413	420	anti-parallel
Strand 6	E	383	385	anti-parallel
Strand 7	E	374	376	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	284	298	anti-parallel
Strand 3	E	443	457	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	357	361	parallel
Strand 6	E	393	395	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	308	first strand
Strand 2	E	316	320	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	426	first strand
Strand 2	E	429	435	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	121	125	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	116	117	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	35	40	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	87	93	anti-parallel
Strand 4	H	99	101	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	23	first strand
Strand 2	H	72	79	anti-parallel
Strand 3	H	64	69	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	495	498	first strand
Strand 2	I	35	39	anti-parallel
Strand 3	J	603	609	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	45	47	first strand
Strand 2	I	486	491	anti-parallel
Strand 3	I	223	228	anti-parallel
Strand 4	I	242	245	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	94	first strand
Strand 2	I	236	239	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	174	first strand
Strand 2	I	153	160	anti-parallel
Strand 3	I	129	132	anti-parallel
Strand 4	I	190	193	anti-parallel
Strand 5	I	179	181	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	260	261	first strand
Strand 2	I	443	457	anti-parallel
Strand 3	I	284	298	anti-parallel
Strand 4	I	329	334	anti-parallel
Strand 5	I	413	420	anti-parallel
Strand 6	I	383	385	anti-parallel
Strand 7	I	374	376	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	271	273	first strand
Strand 2	I	284	298	anti-parallel
Strand 3	I	443	457	anti-parallel
Strand 4	I	465	470	anti-parallel
Strand 5	I	357	361	parallel
Strand 6	I	393	395	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	304	308	first strand
Strand 2	I	316	320	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	423	426	first strand
Strand 2	I	429	435	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	121	125	parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	121	125	parallel
Strand 3	K	92	98	anti-parallel
Strand 4	K	116	117	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	35	40	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	72	79	anti-parallel
Strand 3	L	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UM6