Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UMD entry

There are 4 chains in PDB entry 6UMD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 137	GLU 545
B	PRO 137	GLU 545
C	PRO 137	GLY 546
D	PRO 137	LEU 195

There are 77 helices in PDB entry 6UMD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	149	Right-handed alpha
Helix 2	AA2	A	156	166	Right-handed alpha
Helix 3	AA3	A	172	174	Right-handed 310
Helix 4	AA4	A	175	185	Right-handed alpha
Helix 5	AA5	A	198	205	Right-handed alpha
Helix 6	AA6	A	207	216	Right-handed alpha
Helix 7	AA7	A	223	239	Right-handed alpha
Helix 8	AA8	A	287	301	Right-handed alpha
Helix 9	AA9	A	301	306	Right-handed alpha
Helix 10	AB1	A	334	343	Right-handed alpha
Helix 11	AB2	A	350	366	Right-handed alpha
Helix 12	AB3	A	374	385	Right-handed alpha
Helix 13	AB4	A	385	398	Right-handed alpha
Helix 14	AB5	A	406	418	Right-handed alpha
Helix 15	AB6	A	423	436	Right-handed alpha
Helix 16	AB7	A	449	464	Right-handed alpha
Helix 17	AB8	A	465	467	Right-handed 310
Helix 18	AB9	A	468	476	Right-handed alpha
Helix 19	AC1	A	511	525	Right-handed alpha
Helix 20	AC2	B	138	149	Right-handed alpha
Helix 21	AC3	B	156	165	Right-handed alpha
Helix 22	AC4	B	172	174	Right-handed 310
Helix 23	AC5	B	175	186	Right-handed alpha
Helix 24	AC6	B	198	205	Right-handed alpha
Helix 25	AC7	B	207	216	Right-handed alpha
Helix 26	AC8	B	223	239	Right-handed alpha
Helix 27	AC9	B	287	301	Right-handed alpha
Helix 28	AD1	B	301	306	Right-handed alpha
Helix 29	AD2	B	334	343	Right-handed alpha
Helix 30	AD3	B	350	366	Right-handed alpha
Helix 31	AD4	B	374	383	Right-handed alpha
Helix 32	AD5	B	385	398	Right-handed alpha
Helix 33	AD6	B	406	418	Right-handed alpha
Helix 34	AD7	B	423	436	Right-handed alpha
Helix 35	AD8	B	449	464	Right-handed alpha
Helix 36	AD9	B	465	467	Right-handed 310
Helix 37	AE1	B	468	476	Right-handed alpha
Helix 38	AE2	B	511	525	Right-handed alpha
Helix 39	AE3	C	139	148	Right-handed alpha
Helix 40	AE4	C	156	166	Right-handed alpha
Helix 41	AE5	C	172	174	Right-handed 310
Helix 42	AE6	C	175	189	Right-handed alpha
Helix 43	AE7	C	196	205	Right-handed alpha
Helix 44	AE8	C	207	216	Right-handed alpha
Helix 45	AE9	C	223	239	Right-handed alpha
Helix 46	AF1	C	287	301	Right-handed alpha
Helix 47	AF2	C	301	306	Right-handed alpha
Helix 48	AF3	C	334	343	Right-handed alpha
Helix 49	AF4	C	350	366	Right-handed alpha
Helix 50	AF5	C	374	382	Right-handed alpha
Helix 51	AF6	C	385	398	Right-handed alpha
Helix 52	AF7	C	406	418	Right-handed alpha
Helix 53	AF8	C	423	436	Right-handed alpha
Helix 54	AF9	C	449	464	Right-handed alpha
Helix 55	AG1	C	465	467	Right-handed 310
Helix 56	AG2	C	468	476	Right-handed alpha
Helix 57	AG3	C	511	525	Right-handed alpha
Helix 58	AG4	D	138	149	Right-handed alpha
Helix 59	AG5	D	156	166	Right-handed alpha
Helix 60	AG6	D	172	174	Right-handed 310
Helix 61	AG7	D	175	189	Right-handed alpha
Helix 62	AG8	D	198	204	Right-handed alpha
Helix 63	AG9	D	207	216	Right-handed alpha
Helix 64	AH1	D	223	239	Right-handed alpha
Helix 65	AH2	D	250	255	Right-handed alpha
Helix 66	AH3	D	287	301	Right-handed alpha
Helix 67	AH4	D	301	306	Right-handed alpha
Helix 68	AH5	D	334	343	Right-handed alpha
Helix 69	AH6	D	350	366	Right-handed alpha
Helix 70	AH7	D	374	385	Right-handed alpha
Helix 71	AH8	D	385	398	Right-handed alpha
Helix 72	AH9	D	406	419	Right-handed alpha
Helix 73	AI1	D	423	436	Right-handed alpha
Helix 74	AI2	D	449	464	Right-handed alpha
Helix 75	AI3	D	465	467	Right-handed 310
Helix 76	AI4	D	468	476	Right-handed alpha
Helix 77	AI5	D	511	525	Right-handed alpha

There are 15 sheets in PDB entry 6UMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	194	195	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	504	505	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	487	492	anti-parallel
Strand 5	A	480	482	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	A	372	373	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	194	195	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	262	267	anti-parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	487	492	anti-parallel
Strand 5	B	480	482	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	B	372	373	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	194	195	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	504	505	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	276	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	487	492	anti-parallel
Strand 5	C	480	482	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	372	373	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	194	195	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	504	505	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	276	first strand
Strand 2	D	262	267	anti-parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	487	492	anti-parallel
Strand 5	D	480	482	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	283	first strand
Strand 2	D	420	422	anti-parallel
Strand 3	D	372	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UMD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMD