Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UMG entry

There are 8 chains in PDB entry 6UMG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	CYS 233
L	GLN 1	GLU 214
C	GLY 21	GLU 133
R	ALA 26	ILE 106
h	GLN 1	PRO 230
l	GLN 1	GLU 214
c	GLY 21	THR 131
r	ALA 26	ILE 106

There are 28 helices in PDB entry 6UMG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	62	65	Right-handed 310
Helix 3	AA3	H	87	91	Right-handed 310
Helix 4	AA4	H	204	207	Right-handed 310
Helix 5	AA5	L	80	84	Right-handed 310
Helix 6	AA6	L	125	131	Right-handed alpha
Helix 7	AA7	L	185	192	Right-handed alpha
Helix 8	AA8	C	37	55	Right-handed alpha
Helix 9	AA9	C	124	129	Right-handed 310
Helix 10	AB1	R	28	39	Right-handed alpha
Helix 11	AB2	R	39	52	Right-handed alpha
Helix 12	AB3	R	53	56	Right-handed 310
Helix 13	AB4	R	58	81	Right-handed alpha
Helix 14	AB5	R	86	101	Right-handed alpha
Helix 15	AB6	h	28	32	Right-handed 310
Helix 16	AB7	h	62	65	Right-handed 310
Helix 17	AB8	h	87	91	Right-handed 310
Helix 18	AB9	h	204	206	Right-handed 310
Helix 19	AC1	l	80	84	Right-handed 310
Helix 20	AC2	l	125	131	Right-handed alpha
Helix 21	AC3	l	185	192	Right-handed alpha
Helix 22	AC4	c	37	55	Right-handed alpha
Helix 23	AC5	c	124	129	Right-handed alpha
Helix 24	AC6	r	28	39	Right-handed alpha
Helix 25	AC7	r	39	52	Right-handed alpha
Helix 26	AC8	r	53	56	Right-handed 310
Helix 27	AC9	r	58	81	Right-handed alpha
Helix 28	AD1	r	86	101	Right-handed alpha

There are 30 sheets in PDB entry 6UMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	124	128	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	124	128	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	117	120	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	141	first strand
Strand 2	H	152	162	anti-parallel
Strand 3	H	193	202	anti-parallel
Strand 4	H	180	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	141	first strand
Strand 2	H	152	162	anti-parallel
Strand 3	H	193	202	anti-parallel
Strand 4	H	186	187	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	171	first strand
Strand 2	H	211	217	anti-parallel
Strand 3	H	222	228	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	98	101	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	163	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	134	143	anti-parallel
Strand 3	L	176	184	anti-parallel
Strand 4	L	169	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	204	210	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	78	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	74	75	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	87	first strand
Strand 2	C	100	105	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	3	7	first strand
Strand 2	h	18	25	anti-parallel
Strand 3	h	78	83	anti-parallel
Strand 4	h	68	73	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	11	12	first strand
Strand 2	h	124	128	parallel
Strand 3	h	92	99	anti-parallel
Strand 4	h	34	39	anti-parallel
Strand 5	h	45	51	anti-parallel
Strand 6	h	58	60	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	11	12	first strand
Strand 2	h	124	128	parallel
Strand 3	h	92	99	anti-parallel
Strand 4	h	117	120	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	137	141	first strand
Strand 2	h	152	162	anti-parallel
Strand 3	h	193	202	anti-parallel
Strand 4	h	180	182	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	137	141	first strand
Strand 2	h	152	162	anti-parallel
Strand 3	h	193	202	anti-parallel
Strand 4	h	186	187	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	168	171	first strand
Strand 2	h	211	217	anti-parallel
Strand 3	h	222	228	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	105	109	parallel
Strand 3	l	85	93	anti-parallel
Strand 4	l	34	39	anti-parallel
Strand 5	l	46	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	105	109	parallel
Strand 3	l	85	93	anti-parallel
Strand 4	l	98	101	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	18	23	first strand
Strand 2	l	71	76	anti-parallel
Strand 3	l	63	68	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	118	122	first strand
Strand 2	l	134	143	anti-parallel
Strand 3	l	176	184	anti-parallel
Strand 4	l	163	165	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	118	122	first strand
Strand 2	l	134	143	anti-parallel
Strand 3	l	176	184	anti-parallel
Strand 4	l	169	170	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	157	159	first strand
Strand 2	l	149	154	anti-parallel
Strand 3	l	195	201	anti-parallel
Strand 4	l	204	210	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	64	65	first strand
Strand 2	c	78	79	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	68	69	first strand
Strand 2	c	74	75	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	82	87	first strand
Strand 2	c	100	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UMG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMG