Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UMH entry

There are 4 chains in PDB entry 6UMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
GLN 1SER 232
L
GLN 1GLU 214
h
GLN 1SER 232
l
SER 2GLU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6UMH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
H
28 30Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
H
74 76Right-handed 310
Helix 4
AA4
H
87 91Right-handed 310
Helix 5
AA5
H
144 146Right-handed 310
Helix 6
AA6
H
173 175Right-handed 310
Helix 7
AA7
H
204 206Right-handed 310
Helix 8
AA8
H
218 221Right-handed 310
Helix 9
AA9
L
80 84Right-handed 310
Helix 10
AB1
L
125 131Right-handed alpha
Helix 11
AB2
L
185 192Right-handed alpha
Helix 12
AB3
h
28 32Right-handed 310
Helix 13
AB4
h
62 65Right-handed 310
Helix 14
AB5
h
74 76Right-handed 310
Helix 15
AB6
h
87 91Right-handed 310
Helix 16
AB7
h
144 146Right-handed 310
Helix 17
AB8
h
173 175Right-handed 310
Helix 18
AB9
h
204 206Right-handed 310
Helix 19
AC1
h
218 221Right-handed 310
Helix 20
AC2
l
80 84Right-handed 310
Helix 21
AC3
l
125 131Right-handed alpha
Helix 22
AC4
l
185 191Right-handed alpha
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There are 23 sheets in PDB entry 6UMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
124 128parallel
Strand 3
H
92 104anti-parallel
Strand 4
H
110 113anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
32 39anti-parallel
Strand 4
H
92 104anti-parallel
Strand 5
H
119 120anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
137 141first strand
Strand 2
H
152 162anti-parallel
Strand 3
H
193 202anti-parallel
Strand 4
H
180 182anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
148 149first strand
Strand 2
H
152 162anti-parallel
Strand 3
H
193 202anti-parallel
Strand 4
H
186 187anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
168 171first strand
Strand 2
H
212 217anti-parallel
Strand 3
H
222 227anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 12first strand
Strand 2
L
105 109parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
35 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 12first strand
Strand 2
L
105 109parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
98 101anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 122first strand
Strand 2
L
134 143anti-parallel
Strand 3
L
176 184anti-parallel
Strand 4
L
163 165anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 122first strand
Strand 2
L
134 143anti-parallel
Strand 3
L
176 184anti-parallel
Strand 4
L
169 170anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
157 159first strand
Strand 2
L
149 154anti-parallel
Strand 3
L
195 201anti-parallel
Strand 4
L
204 210anti-parallel
Strand 5
l
204 210anti-parallel
Strand 6
l
195 201anti-parallel
Strand 7
l
149 154anti-parallel
Strand 8
l
157 158anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
3 7first strand
Strand 2
h
18 25anti-parallel
Strand 3
h
78 83anti-parallel
Strand 4
h
68 73anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
10 12first strand
Strand 2
h
124 128parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
34 39anti-parallel
Strand 5
h
46 51anti-parallel
Strand 6
h
58 60anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
10 12first strand
Strand 2
h
124 128parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
117 120anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
137 141first strand
Strand 2
h
152 162anti-parallel
Strand 3
h
193 202anti-parallel
Strand 4
h
180 182anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
148 149first strand
Strand 2
h
152 162anti-parallel
Strand 3
h
193 202anti-parallel
Strand 4
h
186 187anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
h
168 171first strand
Strand 2
h
212 217anti-parallel
Strand 3
h
222 227anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
9 12first strand
Strand 2
l
105 109parallel
Strand 3
l
85 93anti-parallel
Strand 4
l
35 39anti-parallel
Strand 5
l
45 49anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
9 12first strand
Strand 2
l
105 109parallel
Strand 3
l
85 93anti-parallel
Strand 4
l
98 101anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
18 23first strand
Strand 2
l
71 76anti-parallel
Strand 3
l
63 68anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
118 122first strand
Strand 2
l
134 143anti-parallel
Strand 3
l
176 184anti-parallel
Strand 4
l
163 165anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
118 122first strand
Strand 2
l
134 143anti-parallel
Strand 3
l
176 184anti-parallel
Strand 4
l
169 170anti-parallel
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