Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UMM entry

There are 10 chains in PDB entry 6UMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 285
B	MET 7	ARG 475
C	MET 7	ARG 475
D	PHE 13	PRO 93
E	MET 1	ASN 403
F	MET 1	LEU 285
G	MET 7	ARG 475
H	MET 7	ARG 475
I	VAL 33	PRO 93
J	MET 1	ASN 403

There are114 helices in PDB entry 6UMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	17	Right-handed alpha
Helix 2	AA2	A	23	41	Right-handed alpha
Helix 3	AA3	A	48	65	Right-handed alpha
Helix 4	AA4	A	89	95	Right-handed alpha
Helix 5	AA5	A	131	139	Right-handed alpha
Helix 6	AA6	A	143	163	Right-handed alpha
Helix 7	AA7	A	204	214	Right-handed alpha
Helix 8	AA8	A	263	270	Right-handed alpha
Helix 9	AA9	B	34	47	Right-handed alpha
Helix 10	AB1	B	111	120	Right-handed alpha
Helix 11	AB2	B	121	124	Right-handed 310
Helix 12	AB3	B	127	159	Right-handed alpha
Helix 13	AB4	B	161	181	Right-handed alpha
Helix 14	AB5	B	185	196	Right-handed alpha
Helix 15	AB6	B	196	206	Right-handed alpha
Helix 16	AB7	B	213	234	Right-handed alpha
Helix 17	AB8	B	240	264	Right-handed alpha
Helix 18	AB9	B	267	285	Right-handed alpha
Helix 19	AC1	B	285	294	Right-handed alpha
Helix 20	AC2	B	319	351	Right-handed alpha
Helix 21	AC3	B	356	374	Right-handed alpha
Helix 22	AC4	B	379	404	Right-handed alpha
Helix 23	AC5	B	406	430	Right-handed alpha
Helix 24	AC6	B	430	435	Right-handed alpha
Helix 25	AC7	B	436	439	Right-handed 310
Helix 26	AC8	B	440	455	Right-handed alpha
Helix 27	AC9	B	457	466	Right-handed alpha
Helix 28	AD1	B	467	473	Right-handed alpha
Helix 29	AD2	C	34	47	Right-handed alpha
Helix 30	AD3	C	82	87	Right-handed alpha
Helix 31	AD4	C	115	123	Right-handed alpha
Helix 32	AD5	C	128	158	Right-handed alpha
Helix 33	AD6	C	161	182	Right-handed alpha
Helix 34	AD7	C	185	196	Right-handed alpha
Helix 35	AD8	C	196	208	Right-handed alpha
Helix 36	AD9	C	213	233	Right-handed alpha
Helix 37	AE1	C	239	264	Right-handed alpha
Helix 38	AE2	C	267	285	Right-handed alpha
Helix 39	AE3	C	285	294	Right-handed alpha
Helix 40	AE4	C	313	351	Right-handed alpha
Helix 41	AE5	C	356	373	Right-handed alpha
Helix 42	AE6	C	374	376	Right-handed 310
Helix 43	AE7	C	379	404	Right-handed alpha
Helix 44	AE8	C	407	430	Right-handed alpha
Helix 45	AE9	C	435	439	Right-handed 310
Helix 46	AF1	C	440	466	Right-handed alpha
Helix 47	AF2	C	467	474	Right-handed alpha
Helix 48	AF3	D	34	54	Right-handed alpha
Helix 49	AF4	D	62	92	Right-handed alpha
Helix 50	AF5	E	95	130	Right-handed alpha
Helix 51	AF6	E	134	139	Right-handed 310
Helix 52	AF7	E	183	197	Right-handed alpha
Helix 53	AF8	E	210	212	Right-handed 310
Helix 54	AF9	E	220	237	Right-handed alpha
Helix 55	AG1	E	258	264	Right-handed 310
Helix 56	AG2	E	285	298	Right-handed alpha
Helix 57	AG3	E	386	399	Right-handed alpha
Helix 58	AG4	F	2	17	Right-handed alpha
Helix 59	AG5	F	23	41	Right-handed alpha
Helix 60	AG6	F	48	65	Right-handed alpha
Helix 61	AG7	F	89	96	Right-handed alpha
Helix 62	AG8	F	132	137	Right-handed alpha
Helix 63	AG9	F	143	163	Right-handed alpha
Helix 64	AH1	F	204	215	Right-handed alpha
Helix 65	AH2	F	263	271	Right-handed alpha
Helix 66	AH3	G	34	37	Right-handed 310
Helix 67	AH4	G	38	47	Right-handed alpha
Helix 68	AH5	G	112	121	Right-handed alpha
Helix 69	AH6	G	128	159	Right-handed alpha
Helix 70	AH7	G	161	181	Right-handed alpha
Helix 71	AH8	G	185	208	Right-handed alpha
Helix 72	AH9	G	213	235	Right-handed alpha
Helix 73	AI1	G	240	264	Right-handed alpha
Helix 74	AI2	G	267	285	Right-handed alpha
Helix 75	AI3	G	285	294	Right-handed alpha
Helix 76	AI4	G	319	349	Right-handed alpha
Helix 77	AI5	G	356	374	Right-handed alpha
Helix 78	AI6	G	379	404	Right-handed alpha
Helix 79	AI7	G	406	430	Right-handed alpha
Helix 80	AI8	G	430	435	Right-handed alpha
Helix 81	AI9	G	440	466	Right-handed alpha
Helix 82	AJ1	G	469	474	Right-handed alpha
Helix 83	AJ2	H	34	47	Right-handed alpha
Helix 84	AJ3	H	82	87	Right-handed alpha
Helix 85	AJ4	H	115	123	Right-handed alpha
Helix 86	AJ5	H	128	158	Right-handed alpha
Helix 87	AJ6	H	160	181	Right-handed alpha
Helix 88	AJ7	H	182	184	Right-handed 310
Helix 89	AJ8	H	186	196	Right-handed alpha
Helix 90	AJ9	H	196	206	Right-handed alpha
Helix 91	AK1	H	213	233	Right-handed alpha
Helix 92	AK2	H	239	264	Right-handed alpha
Helix 93	AK3	H	267	285	Right-handed alpha
Helix 94	AK4	H	285	294	Right-handed alpha
Helix 95	AK5	H	313	351	Right-handed alpha
Helix 96	AK6	H	356	373	Right-handed alpha
Helix 97	AK7	H	380	404	Right-handed alpha
Helix 98	AK8	H	407	430	Right-handed alpha
Helix 99	AK9	H	435	439	Right-handed 310
Helix 100	AL1	H	440	466	Right-handed alpha
Helix 101	AL2	H	468	475	Right-handed alpha
Helix 102	AL3	I	34	51	Right-handed alpha
Helix 103	AL4	I	62	92	Right-handed alpha
Helix 104	AL5	J	95	130	Right-handed alpha
Helix 105	AL6	J	132	136	Right-handed 310
Helix 106	AL7	J	183	197	Right-handed alpha
Helix 107	AL8	J	210	212	Right-handed 310
Helix 108	AL9	J	220	237	Right-handed alpha
Helix 109	AM1	J	255	260	Right-handed alpha
Helix 110	AM2	J	261	263	Right-handed 310
Helix 111	AM3	J	285	294	Right-handed alpha
Helix 112	AM4	J	295	297	Right-handed 310
Helix 113	AM5	J	324	328	Right-handed 310
Helix 114	AM6	J	386	398	Right-handed alpha

There are 19 sheets in PDB entry 6UMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	75	82	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	102	114	anti-parallel
Strand 5	A	98	99	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	114	anti-parallel
Strand 3	A	219	228	anti-parallel
Strand 4	A	233	243	anti-parallel
Strand 5	A	193	199	anti-parallel
Strand 6	A	186	188	anti-parallel
Strand 7	A	181	183	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	186	188	anti-parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	256	257	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	75	82	anti-parallel
Strand 3	A	124	127	anti-parallel
Strand 4	A	102	114	anti-parallel
Strand 5	A	219	228	anti-parallel
Strand 6	A	233	243	anti-parallel
Strand 7	A	193	199	anti-parallel
Strand 8	A	256	257	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	93	98	anti-parallel
Strand 3	B	9	16	parallel
Strand 4	B	23	30	anti-parallel
Strand 5	C	110	111	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	14	first strand
Strand 2	C	25	30	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	70	first strand
Strand 2	C	95	97	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	24	first strand
Strand 2	E	171	173	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	166	first strand
Strand 2	E	199	208	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	249	first strand
Strand 2	E	315	318	parallel
Strand 3	E	338	343	parallel
Strand 4	E	214	218	parallel
Strand 5	E	359	362	parallel
Strand 6	E	367	370	anti-parallel
Strand 7	E	375	377	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	166	168	first strand
Strand 2	F	75	82	anti-parallel
Strand 3	F	117	127	anti-parallel
Strand 4	F	106	114	anti-parallel
Strand 5	F	219	229	anti-parallel
Strand 6	F	232	243	anti-parallel
Strand 7	F	193	199	anti-parallel
Strand 8	F	256	257	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	98	99	first strand
Strand 2	F	102	103	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	181	182	first strand
Strand 2	F	187	188	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	93	98	anti-parallel
Strand 3	G	9	16	parallel
Strand 4	G	23	30	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	30	first strand
Strand 2	H	9	15	anti-parallel
Strand 3	H	93	97	parallel
Strand 4	H	68	71	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	23	24	first strand
Strand 2	J	172	173	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	163	first strand
Strand 2	J	203	208	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	216	219	first strand
Strand 2	J	359	362	parallel
Strand 3	J	367	370	anti-parallel
Strand 4	J	375	377	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	246	248	first strand
Strand 2	J	314	318	parallel
Strand 3	J	337	341	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMM