Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6UMR entry

There are 2 chains in PDB entry 6UMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 441
B
 VAL 3PRO 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6UMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 39Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
48 71Right-handed alpha
Helix 4
AA4
A
84 98Right-handed alpha
Helix 5
AA5
A
99 104Right-handed 310
Helix 6
AA6
A
112 130Right-handed alpha
Helix 7
AA7
A
140 151Right-handed alpha
Helix 8
AA8
A
151 169Right-handed alpha
Helix 9
AA9
A
170 172Right-handed 310
Helix 10
AB1
A
173 191Right-handed alpha
Helix 11
AB2
A
214 218Right-handed alpha
Helix 12
AB3
A
225 239Right-handed alpha
Helix 13
AB4
A
255 272Right-handed alpha
Helix 14
AB5
A
293 306Right-handed alpha
Helix 15
AB6
A
309 325Right-handed alpha
Helix 16
AB7
A
333 338Right-handed 310
Helix 17
AB8
A
341 343Right-handed 310
Helix 18
AB9
A
344 349Right-handed alpha
Helix 19
AC1
A
349 357Right-handed alpha
Helix 20
AC2
A
366 374Right-handed alpha
Helix 21
AC3
A
384 389Right-handed alpha
Helix 22
AC4
A
414 423Right-handed alpha
Helix 23
AC5
A
425 429Right-handed 310
Helix 24
AC6
B
15 39Right-handed alpha
Helix 25
AC7
B
39 48Right-handed alpha
Helix 26
AC8
B
48 71Right-handed alpha
Helix 27
AC9
B
84 98Right-handed alpha
Helix 28
AD1
B
99 104Right-handed 310
Helix 29
AD2
B
112 130Right-handed alpha
Helix 30
AD3
B
140 151Right-handed alpha
Helix 31
AD4
B
151 168Right-handed alpha
Helix 32
AD5
B
169 172Right-handed 310
Helix 33
AD6
B
173 190Right-handed alpha
Helix 34
AD7
B
214 218Right-handed alpha
Helix 35
AD8
B
225 239Right-handed alpha
Helix 36
AD9
B
255 272Right-handed alpha
Helix 37
AE1
B
293 306Right-handed alpha
Helix 38
AE2
B
309 325Right-handed alpha
Helix 39
AE3
B
333 338Right-handed 310
Helix 40
AE4
B
341 343Right-handed 310
Helix 41
AE5
B
344 349Right-handed alpha
Helix 42
AE6
B
349 357Right-handed alpha
Helix 43
AE7
B
366 374Right-handed alpha
Helix 44
AE8
B
384 389Right-handed alpha
Helix 45
AE9
B
414 423Right-handed alpha
Helix 46
AF1
B
425 429Right-handed 310
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There are 2 sheets in PDB entry 6UMR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
433 438parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
361 365parallel
Strand 5
A
247 251parallel
Strand 6
A
277 281parallel
Strand 7
A
328 331parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 224first strand
Strand 2
B
433 438parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
361 365parallel
Strand 5
B
247 251parallel
Strand 6
B
277 281parallel
Strand 7
B
328 331parallel
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