Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6UMX entry

There are 6 chains in PDB entry 6UMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 42	SER 375
L	GLN 1	CYS 214
H	ILE 2	LYS 227
l	VAL 3	THR 212
h	ILE 2	PRO 226
B	CYS 42	LEU 230

There are 28 helices in PDB entry 6UMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	64	Right-handed alpha
Helix 2	AA2	A	73	81	Right-handed alpha
Helix 3	AA3	A	84	93	Right-handed alpha
Helix 4	AA4	A	208	218	Right-handed alpha
Helix 5	AA5	L	80	84	Right-handed 310
Helix 6	AA6	L	124	130	Right-handed alpha
Helix 7	AA7	L	184	191	Right-handed alpha
Helix 8	AA8	H	28	32	Right-handed 310
Helix 9	AA9	H	62	65	Right-handed 310
Helix 10	AB1	H	74	76	Right-handed 310
Helix 11	AB2	H	87	91	Right-handed 310
Helix 12	AB3	H	107	111	Right-handed 310
Helix 13	AB4	H	169	171	Right-handed 310
Helix 14	AB5	H	214	217	Right-handed 310
Helix 15	AB6	l	80	84	Right-handed 310
Helix 16	AB7	l	124	130	Right-handed alpha
Helix 17	AB8	l	184	190	Right-handed alpha
Helix 18	AB9	h	28	32	Right-handed 310
Helix 19	AC1	h	62	65	Right-handed 310
Helix 20	AC2	h	74	76	Right-handed 310
Helix 21	AC3	h	87	91	Right-handed 310
Helix 22	AC4	h	107	111	Right-handed 310
Helix 23	AC5	h	169	171	Right-handed 310
Helix 24	AC6	h	214	217	Right-handed 310
Helix 25	AC7	B	43	65	Right-handed alpha
Helix 26	AC8	B	73	81	Right-handed alpha
Helix 27	AC9	B	84	93	Right-handed alpha
Helix 28	AD1	B	208	218	Right-handed alpha

There are 30 sheets in PDB entry 6UMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	207	first strand
Strand 2	A	151	160	anti-parallel
Strand 3	A	252	257	anti-parallel
Strand 4	A	114	120	anti-parallel
Strand 5	B	358	374	anti-parallel
Strand 6	B	340	353	anti-parallel
Strand 7	B	298	300	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	167	175	anti-parallel
Strand 3	A	225	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	308	310	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	303	305	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	342	353	anti-parallel
Strand 3	A	358	372	anti-parallel
Strand 4	B	114	120	anti-parallel
Strand 5	B	252	257	anti-parallel
Strand 6	B	151	160	anti-parallel
Strand 7	B	202	207	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	108	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	104	108	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	97	100	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	71	76	anti-parallel
Strand 3	L	63	68	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	162	164	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	168	169	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	157	first strand
Strand 2	L	148	153	anti-parallel
Strand 3	L	194	200	anti-parallel
Strand 4	L	203	209	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	176	178	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	182	183	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	167	first strand
Strand 2	H	207	213	anti-parallel
Strand 3	H	218	224	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	104	108	parallel
Strand 3	l	85	93	anti-parallel
Strand 4	l	35	39	anti-parallel
Strand 5	l	46	49	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	104	108	parallel
Strand 3	l	85	93	anti-parallel
Strand 4	l	97	100	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	18	23	first strand
Strand 2	l	71	76	anti-parallel
Strand 3	l	63	68	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	117	121	first strand
Strand 2	l	133	142	anti-parallel
Strand 3	l	175	183	anti-parallel
Strand 4	l	162	164	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	117	121	first strand
Strand 2	l	133	142	anti-parallel
Strand 3	l	175	183	anti-parallel
Strand 4	l	168	169	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	156	158	first strand
Strand 2	l	148	153	anti-parallel
Strand 3	l	194	200	anti-parallel
Strand 4	l	203	209	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	3	7	first strand
Strand 2	h	18	25	anti-parallel
Strand 3	h	78	83	anti-parallel
Strand 4	h	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	12	first strand
Strand 2	h	120	124	parallel
Strand 3	h	92	98	anti-parallel
Strand 4	h	34	39	anti-parallel
Strand 5	h	45	51	anti-parallel
Strand 6	h	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	133	137	first strand
Strand 2	h	148	158	anti-parallel
Strand 3	h	189	198	anti-parallel
Strand 4	h	176	178	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	133	137	first strand
Strand 2	h	148	158	anti-parallel
Strand 3	h	189	198	anti-parallel
Strand 4	h	182	183	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	164	167	first strand
Strand 2	h	207	213	anti-parallel
Strand 3	h	218	224	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	196	first strand
Strand 2	B	167	175	anti-parallel
Strand 3	B	225	230	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	308	309	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	289	first strand
Strand 2	B	303	305	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6UMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6UMX